Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0748 ATGGAGCTTTCACAACTTGGTTTTCTAGAGGAACTACTAGCTCCAAGAAGAGACACTTGGAATAATGTTTTGTCCACAGGGTTGAATGAACTATTCCCTAGTGGTTGGAGCTTTGATTCTTTTGATGAGAATCCTTCTTTAGCTTCATTGAATCCCTCATTTGCTGCATTCTCAACACCAATAAACCATAGATTTGAATTCCCTTATGGAAATGAAGCAGCAGCAGCAGCAGCATATTCATTTGGTGATGGGTTCACAATGCCAGAGCTTGATTCATCATACACCAGGAATTATGAATCAGCACCACTTTTACCACAAGAAGATAATAAACCTTCAATCCATGATGAAGATCTTGGCTTTTTGGGGAGTGATAGCCTGAGTATGGAAGAAAGAAATAATGGCTTCAAAGTTGAGGAACAAGTTTCAGAGATTCCAGTTTTCAACAAGGGCACTTGTGGAGAGAAAAAATCAAAATTAAAGAAAATAGAAGGGCAACCCTCAAAGAATCTTATGGCAGAAAGAAGGAGAAGAAAACGTCTCAATGATAGGCTTTCTATGCTAAGGTCAATAGTCCCTAAGATCAGTAAGATGGACAGGACTTCTATTCTTGGAGATACCATTGATTACATGAAAGAACTTCTAGAAAGGATAGGAAAGTTGCAAGAACCAGAAATGGAAGAGGGAACTAATCAAATAAACATCCTTGACAATTCAAAGGAGCAAAAGCCAATTGAAGGAATGGTAAGAAATTCCCCCAAGTTTAATGTTGAAAGGAAAGAAAAGGACACCAAGATAAGCATTTGCTGTACCACAAAGCCTGGATTATTATTGTCAACAGTAAACACCTTAGAAGCACTAGGCCTTGAAATTCACCAGTGTGTTATAAGCAGCTTCAGTGATTTTTCTCTGCAAGCCTCTTGCTCAGAGGCAGCTGAACAAAGAAACTGTATTAGCCCTGAAGACATAAAGCAAGCACTATTCAGAAATGCAGGTTACGGTGGAAGATGTCTCTAG 1014 0.3895 MELSQLGFLEELLAPRRDTWNNVLSTGLNELFPSGWSFDSFDENPSLASLNPSFAAFSTPINHRFEFPYGNEAAAAAAYSFGDGFTMPELDSSYTRNYESAPLLPQEDNKPSIHDEDLGFLGSDSLSMEERNNGFKVEEQVSEIPVFNKGTCGEKKSKLKKIEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERIGKLQEPEMEEGTNQINILDNSKEQKPIEGMVRNSPKFNVERKEKDTKISICCTTKPGLLLSTVNTLEALGLEIHQCVISSFSDFSLQASCSEAAEQRNCISPEDIKQALFRNAGYGGRCL* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0748 337 Pfam Helix-loop-helix DNA-binding domain 170 213 IPR011598 GO:0046983
Lan18g0748 337 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 164 213 IPR011598 GO:0046983
Lan18g0748 337 CDD ACT_UUR-ACR-like 263 304 - -
Lan18g0748 337 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 167 224 IPR036638 GO:0046983
Lan18g0748 337 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 2 337 - -
Lan18g0748 337 PANTHER - 2 337 - -
Lan18g0748 337 Gene3D - 148 214 IPR036638 GO:0046983
Lan18g0748 337 SMART finulus 170 219 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0748 Lan-Chr18 12905905 12907989 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0748 155 337 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 69.565 6.73e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan18g0748 HLH 7.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0748 - - gmx:100806571 534.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0545 17 4363930 4365602 Lan18g0748 18 12905905 12907989 LSH
Lan18g0748 18 12905905 12907989 Lan6g0515 6 4364857 4366470 LSH