Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0744 ATGGGAAGAGGGAAGATTGTGATTCGGAGGATCGATAACTCTACGAGCAGGCAAGTAACTTTCTCAAAGAGGAGAAAGGGATTGATCAAGAAGGCCAAAGAGCTAGCAATTCTATGTGATGCCGAAGTTGGACTTGTCATATTCTCCAACACTGGAAAGCTTTATGAATATGCAAGCACCAGCATGAAATCAGTGATTGAGAGATACAACACATGCAAGGGGGAAAACCAACAGCTGATAAATCCAGAATCAGAAGTCAAGTTTTGGCAAAAGGAGGCAGACATTTTAAGGCAGCAACTACAGAATCTACAAGAAAACCATCGGCAAATGATGGGAGATCGGCTCTCCGGTTTGAGTGTCAGAAACCTACAAGATATAGAGAATCAACTCGAAGTGAGTCTCCAAGGTGTCCGGATGAAAAAGGAGCAAATTCTAACAGATGAAATCCGAGAGCTGAACCAAAAGGGCAAACTTATCCATCAGGAAAATGTGGAGCTTTATAAGAAAGTAAACCTCATTCAACAAGAAAACACACAATTATGCAAAAAGGTCTATGGCACAACGGATGCGGCTGTGAGAAGAAATGTATTTGTTCCGATTCCATTTGATGTTCATGCAGCAAGGGGTCCACAAGCATTGATCCAACTTCAATTAAGCCAACCTGATCAAGAAACGTGTGAGACATCAGGCAGTGGCAGTGCCACAAAATGA 711 0.4233 MGRGKIVIRRIDNSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLVIFSNTGKLYEYASTSMKSVIERYNTCKGENQQLINPESEVKFWQKEADILRQQLQNLQENHRQMMGDRLSGLSVRNLQDIENQLEVSLQGVRMKKEQILTDEIRELNQKGKLIHQENVELYKKVNLIQQENTQLCKKVYGTTDAAVRRNVFVPIPFDVHAARGPQALIQLQLSQPDQETCETSGSGSATK* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0744 236 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lan18g0744 236 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lan18g0744 236 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lan18g0744 236 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Lan18g0744 236 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lan18g0744 236 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Lan18g0744 236 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lan18g0744 236 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Lan18g0744 236 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lan18g0744 236 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lan18g0744 236 PANTHER MADS-BOX TRANSCRIPTION FACTOR 23 ISOFORM X1 1 231 - -
Lan18g0744 236 Coils Coil 86 113 - -
Lan18g0744 236 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 231 - -
Lan18g0744 236 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lan18g0744 236 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0744 Lan-Chr18 12843875 12851876 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0744 1 232 MADS-box Gene Family AT2G22630 61.373 3.20e-99 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lan18g0744 K-box 3.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0744 K09264 - gmx:100795778 336.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g0744 18 12843875 12851876 Lan18g0744 18 12843875 12851876 ECH
Lan17g0553 17 4457583 4465969 Lan18g0744 18 12843875 12851876 LSH