Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0741 ATGATGATGTCACAAGATGAAACACTTCCAAAACAAGCAGCAACAACCAAAGACCATGATATTAATAACCAACTAGGTTCTAATTCTGGTAGCAGCAAAAGTAGCACCATAACAAAAAGGCCACAAGAACAAATCTTGAAGTGTCCACGATGTGACTCACCAAAGACCAAGTTCTGCTACTACAACAACTACAGTCTCACACAGCCAAGGCACTTCTGCAAAACATGTAGAAGATATTGGACAAAAGGTGGAGCTTTGCGTAACGTCCCTATAGGTGGTGGTTGCAGGAAGAACAAGAAGGTTAAATCTTCAAGGCTTTCATGTGATTCCAAAGACTCTGGTGGTGGCACTTCTTCTTCAGAACATTATCATCAGGGTGGTGGCCTTAAGTTCCTTCATTCTCTTTCATCACCTCCTGTTCATGATTTTCAAGTTGGTGGTTTAACTCTACCATTCCTTCACCACCCTCCAATTCCAACCACTACTTCCATTTACAACAACCAGTTTTCTTCTTTTGGAGATGTTTCAAATGCTCCAAGTTTCAACCTTGACCCTTCTTCTGGTACCACCAACCCAAGTTCTTCTAATTTGCTTGGTCTGTATTACCCATTTAATGGTGCAAATTCTGCAATACAAGGTGATATGAGTTCAATGAACCTTAATAATAACCTTGCTTCTTCTATAGAGTCCTTGAGTTTTATAACCCAGGACTTGCACTGGAAGGTTCAGCAGCAGAGGTTAGCTATGTTGTTTGGTGGAGAAAACCAGAAAGAGGGTAACCTTGAGATTAACCAGAACCAGAGGCCTGAACCCATTTTGTTTCAGAACCTTGAGATTTCAAAGCCAGAAACTTTCCCTATTGAGATCAGTTCAAGAAAAGAAGGCCCAAGTGGTGGAGGGGATATACCAACTGAGTGGTTCTTCGGGAATTCTTCTGCCTCAGTCACAACAACACCTACATCAACAACTAGTGGTGGTGGACATGGACATGACAATGATAATGGTAATAACTGGAATAGTAATGTTCATGCTTGGGGTGATGTCAATGTGCAGCAGCGCCAGCAATATAGTTCTTTGCCCTAG 1083 0.4183 MMMSQDETLPKQAATTKDHDINNQLGSNSGSSKSSTITKRPQEQILKCPRCDSPKTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKVKSSRLSCDSKDSGGGTSSSEHYHQGGGLKFLHSLSSPPVHDFQVGGLTLPFLHHPPIPTTTSIYNNQFSSFGDVSNAPSFNLDPSSGTTNPSSSNLLGLYYPFNGANSAIQGDMSSMNLNNNLASSIESLSFITQDLHWKVQQQRLAMLFGGENQKEGNLEINQNQRPEPILFQNLEISKPETFPIEISSRKEGPSGGGDIPTEWFFGNSSASVTTTPTSTTSGGGHGHDNDNGNNWNSNVHAWGDVNVQQRQQYSSLP* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0741 360 MobiDBLite consensus disorder prediction 314 360 - -
Lan18g0741 360 ProSitePatterns Zinc finger Dof-type signature. 48 84 IPR003851 GO:0003677|GO:0006355
Lan18g0741 360 ProSiteProfiles Zinc finger Dof-type profile. 46 100 IPR003851 GO:0003677|GO:0006355
Lan18g0741 360 MobiDBLite consensus disorder prediction 1 41 - -
Lan18g0741 360 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN-RELATED 24 350 - -
Lan18g0741 360 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 24 350 IPR045174 GO:0003700|GO:0006355
Lan18g0741 360 Pfam Dof domain, zinc finger 44 100 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0741 Lan-Chr18 12771160 12772769 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0741 3 360 C2C2-Dof Transcription Factor Family AT5G65590 40.164 4.17e-65 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lan18g0741 zf-Dof 2.4e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0557 17 4553727 4555349 Lan18g0741 18 12771160 12772769 LSH
Lan18g0741 18 12771160 12772769 Lan6g0529 6 4597868 4599591 LSH