Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0723 ATGGAATTCGAAGATCAAGAGGAGCAAGAAGAAGAACTGTGTTTTGACCCAATGGGAAACCCGAACCGGGTTAAAATACCCGGTTCAGTTGAACCCATCATGGTGTCTCAACCTGTTAGGAGCAGCAGCAACAAGGCGAGGTACCGGGAGTGTCTGAAAAACCACGCCGTAGGGATCGGTGGCCACGCTCTTGACGGCTGCTGCGAGTTCATGCCTGCCGGAACAGAAGGAACCCTTGATGCACTCAAATGTGCTGCCTGCAACTGCCACCGCAACTTCCACCGTAAGGAAACCGACACCGCCGCCATCGTCACAGGTTCTGAGCCGTTTCTCCTAACTCACCACTCTCACCCTCACCACCACCAGCCACCACCGCATTTCGCTGCGTACTACCGTTCCCCGGCTGGGTACCTTCACTTGTCGGGTGGAGGCCATCACCAGAGAGGAGTTGCACCGGCTGGGACGCTGGCTTTGCCGTCGACCTCCGGTGCCGGAGGAGGAGGTGCTGACGCCCAGAACACGAAGGAGGATCAAGAAGACATGTCGAACCCGATGAGCTATGGAGATGGAAGTGGAGGGTCCAAGAAGAGGCACAGAACAAAATTCAGTCAAGAGCAGAAAGATAAGATGCTTGAACTTGCGGAGAGGCTAGGTTGGAGGATTCAGAAGCATGATGAGAATGTGATTCAGGAGTTCTGTAACGAAACTGGGGTCAAGCGTCACGTTCTTAAGGTTTGGATGCATAACAACAAGCACACTCTTGGTAAGAAGCCCTAG 777 0.538 MEFEDQEEQEEELCFDPMGNPNRVKIPGSVEPIMVSQPVRSSSNKARYRECLKNHAVGIGGHALDGCCEFMPAGTEGTLDALKCAACNCHRNFHRKETDTAAIVTGSEPFLLTHHSHPHHHQPPPHFAAYYRSPAGYLHLSGGGHHQRGVAPAGTLALPSTSGAGGGGADAQNTKEDQEDMSNPMSYGDGSGGSKKRHRTKFSQEQKDKMLELAERLGWRIQKHDENVIQEFCNETGVKRHVLKVWMHNNKHTLGKKP* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0723 258 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 38 257 - -
Lan18g0723 258 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 38 257 - -
Lan18g0723 258 SUPERFAMILY Homeodomain-like 181 256 IPR009057 -
Lan18g0723 258 MobiDBLite consensus disorder prediction 1 21 - -
Lan18g0723 258 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 47 97 IPR006456 -
Lan18g0723 258 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 48 97 IPR006456 -
Lan18g0723 258 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 195 251 IPR006455 -
Lan18g0723 258 Gene3D - 180 255 - -
Lan18g0723 258 MobiDBLite consensus disorder prediction 141 204 - -
Lan18g0723 258 Pfam ZF-HD protein dimerisation region 46 98 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0723 Lan-Chr18 12556719 12557968 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0723 1 254 ZF-HD Transcription Factor Family AT4G24660 48.235 2.68e-70 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lan18g0723 ZF-HD_dimer 5.4e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0723 - - gmx:100808910 320.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0240 17 1637070 1639330 Lan18g0723 18 12556719 12557968 LSH
Lan18g0723 18 12556719 12557968 Lan6g0555 6 4842631 4843625 LSH