Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0713 ATGCCTCTTCTACTTGCAGTTACACAAACACAATCTCTGTTAATTCCTTCCATCACTTATCACAACAACAAAACTCAACCTCTTATCATCAAAGCCACTCAGAAGCGCTTTCCTTTCACCACGACGCGAAAAACCGTTCATTCTCGGCGCATTCTCTTAACCTCTTATCTTCCAAAATCAGCTTCCATAAACGGGGCCAACTTCCAGAACAATCCAGAAGCTTCGAATGAAGTCAATGCTACTGACTTTTTTCACAGACTCAGAAAATGGATTCAGTCGTTTCCTTCGGTTTTGCCAGGTGGAAAATGGTGGGACCTATCAGATGAAGATGTTGAGGTTCAGGTTCTGGCTCAACCTGTCACTGTGTGGCGCGCCTTGGCTAAAATGTGGGACCTTGTTTCTCGTGACCGGTGGGTCATTTTTGCTGCTTTCACTGCTCTCATTTTCGCTGCGGTTTCTGAGATTTCAATACCGCATTTCATGACAGCATCAATATTCTCAGCACAGAGTGCTGATGTTACGGTTTTTCACCGGAATGTGCGTCTGTTGGTTCTCATGTGTACAATTTCGGGAATATGCAGTGGGATCCGAGGTTGCTGTTTTGGCATTGCAAACATGATTTTGGTTAAGAGAATGAGAGAAACATTGTACTCTTCCCTTCTTCTTCAGGATATATCATTTTTTGACACTGAAACAGTTGGTGATTTGACTAGTAGGCTTGGGGCAGATTGTCAACAAGTGTCGCGGGTTATTGGAAATGATATTAACTTGATATTGCGCAATTTGCTTCAGGGGACAGGTTCGTTAATCTATTTGTTGGCTTTGTCTTGGCAACTTGGTTTATCTACATTACTGATATGCTCCATACTAGCTGCAGTCATGCTACGTTATGGGAGGTACCAGAAAAAGTCAGCAAGGTTGATCCAAGAAGTCACAGCTTCTGCCAATGAAGTGGCTCAGGAGACATTCTCACTCATTAGAACTGTCCGTGTTTATGGCACAGAAGAAGAAGAACTTGGAAGGTACAAATCATGGCTGGGGAAATTAGCTGACATAAGCTTGCGACAAAGTGCTGCATATGGATTTTGGAATTTAAGCTTCAACACTCTTTATCACTCAACTCAGGTTATTGCTGTGCTGTTTGGAGGAATTTCTATTCTTGCGGGTCATATTACAGCAGAGAAACTTACTAAGTTTATACTATACAGTGAATGGCTAATTTTTTCAACCTGGTGGGTGGGAGACAATATCTCCAATTTGATGCAATCTGTTGGGGCTAGTGAAAAAGTATTTCATTTAATGGATCTCACATCTAGCAGCCAATTCATAGCTAGAGGAGTAAAGTTGCAGAGCTTAACAGGGCAAATTGAGTTTCTAAACATATCTTTTCACTATCCTTCAAGGCCAACGGTACCGGTAGTGCAACTTGTAAACTTTGTTGTCCATCCCAGTGAGGTGGTTGCAATTGTTGGTCTTAGTGGTAGTGGAAAAAGCACACTGGTAAACCTTTTACTCCGTCTTTATGAGCCTACAAATGGTCAGATTTTGATAGATGGAATCCCTCTTAAAAACATGGATGTCATCTGGTGGAGAGAGAGAATTGGATATGTTGGACAGGAACCAAAGCTGTTCCGGATGGATATTAGTTCAAACATCAGATATGGATGTGCTCGAGATGTAAAACAGGAGGATGTTGAATGGGCTGCAAAGCAGGCCTATGCCCATGACTTCATCTCTGCACTTCCCAATGGTTATGAAACACTTGTTGATGATGATTTGTTAAGTGGGGGACAGAAGCAGCGAATTGCTATTGCTAGAGCCCTTCTCCGGGATCCGAAAATATTGATCCTTGATGAAGCCACCAGTGCACTGGATGCTGAGAGTGAACATAATGTCAAGGGTGTTCTTCGATCTGTGAGAAGTGACTCCCATTCAAGGAGAAGTGTTATAGTCATTGCACACAGGCTTTCTACCATACAAGCAGCTGACAGAATTGTTGTGATGGACAGTGGTCATGTTCTTGAGAGTGGGAGTCACAGGGAACTTCTATTAAAAGATGGTTTATATGCAAGGTTGACTAGAAAACAGGCTGATGCCATGGCATGA 2106 0.4255 MPLLLAVTQTQSLLIPSITYHNNKTQPLIIKATQKRFPFTTTRKTVHSRRILLTSYLPKSASINGANFQNNPEASNEVNATDFFHRLRKWIQSFPSVLPGGKWWDLSDEDVEVQVLAQPVTVWRALAKMWDLVSRDRWVIFAAFTALIFAAVSEISIPHFMTASIFSAQSADVTVFHRNVRLLVLMCTISGICSGIRGCCFGIANMILVKRMRETLYSSLLLQDISFFDTETVGDLTSRLGADCQQVSRVIGNDINLILRNLLQGTGSLIYLLALSWQLGLSTLLICSILAAVMLRYGRYQKKSARLIQEVTASANEVAQETFSLIRTVRVYGTEEEELGRYKSWLGKLADISLRQSAAYGFWNLSFNTLYHSTQVIAVLFGGISILAGHITAEKLTKFILYSEWLIFSTWWVGDNISNLMQSVGASEKVFHLMDLTSSSQFIARGVKLQSLTGQIEFLNISFHYPSRPTVPVVQLVNFVVHPSEVVAIVGLSGSGKSTLVNLLLRLYEPTNGQILIDGIPLKNMDVIWWRERIGYVGQEPKLFRMDISSNIRYGCARDVKQEDVEWAAKQAYAHDFISALPNGYETLVDDDLLSGGQKQRIAIARALLRDPKILILDEATSALDAESEHNVKGVLRSVRSDSHSRRSVIVIAHRLSTIQAADRIVVMDSGHVLESGSHRELLLKDGLYARLTRKQADAMA* 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0713 701 Gene3D ABC transporter type 1, transmembrane domain 123 441 IPR036640 GO:0005524|GO:0016021
Lan18g0713 701 Gene3D - 446 700 IPR027417 -
Lan18g0713 701 SUPERFAMILY ABC transporter transmembrane region 128 435 IPR036640 GO:0005524|GO:0016021
Lan18g0713 701 PANTHER ABC TRANSPORTER B FAMILY MEMBER 26, CHLOROPLASTIC 79 700 - -
Lan18g0713 701 CDD ABC_6TM_TAP 143 430 - -
Lan18g0713 701 PANTHER ABC TRANSPORTER B FAMILY 79 700 - -
Lan18g0713 701 SMART AAA_5 483 672 IPR003593 -
Lan18g0713 701 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 448 696 IPR027417 -
Lan18g0713 701 Pfam ABC transporter 477 622 IPR003439 GO:0005524
Lan18g0713 701 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 456 695 IPR003439 GO:0005524
Lan18g0713 701 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 141 422 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lan18g0713 701 Pfam ABC transporter transmembrane region 141 408 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lan18g0713 701 ProSitePatterns ABC transporters family signature. 594 608 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0713 Lan-Chr18 12391852 12400895 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0713 211 699 Calmodulin-binding Proteins AT2G36910 34.337 8.39e-71 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0713 - - gmx:100775951 1102.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0576 17 4792307 4801387 Lan18g0713 18 12391852 12400895 LSH