Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0671 ATGGCGTTAACGAGTTCGAAACCAGCAGCGAAGGTTTTATGGGGTGAACTGGAAGAAGACGATGGAGAAGATCTCGATTTTCTTTTACCACCTAAGCATGTAATTGGTCCTGACCAGAACGGATTAAAGAAGGTGATAGAATACAAGTTCAATGATGAAGGGAATAAGGTTAAGATTACTACCACAACTCGAGTACGCAAACTCGCCAATGCACGTGTCAGTAAACGTGCCATTGAGAGACGTTCGTGGCTTAAGTTTGGTGATGCTGTTCATGAGGATGTAGGTAGTAGACTCACTATGGTTTCCACTGAAGAGATTGTTCTTGAACGACCCAAGCCTCTTGGTTCTAAAGCTGAGGAACCAAAGGCTTCTGGAGATCCATTAGCCCAATTTCAGAAAGGTGCTGTTCTTATGGTCTGTAGGACTTGTGGGAAGAAGGGTGACCACTGGACTTCAAGATGTCCATACAAGGATCTTGCTGCACCATCTGAGGGATTCGTGGATAAGCCTCCAACATCCGATGCTGCAGCTGCTGCTCCTGGTTCAACAAAGGGAGCATATGTGCCTCCTGGAATGAGAGCCGGTGCAGAGAGGACTGGATCGGATATGAGGCGTAGAAATGATGAAAATTCTGTAAGGGTCACCAACCTCTCAGAGGACACTAGAGAGCCTGATTTGCTTGAACTGTTCCGTCCTTTTGGCGCTGTGAGCAGAGTCTATGTTGCTATTGATCAAAAAACCGGCACGAGCAGAGGATTTGGCTTTGTTAACTTTGTTAACAGGGAAGAAGCACAGAGAGCTATTAACAAACTGAATGGATATGGGTATGACAGTCTCATCCTCAGAGTTGAATGGGCCACCCCAAGGACAACCTAG 876 0.4623 MALTSSKPAAKVLWGELEEDDGEDLDFLLPPKHVIGPDQNGLKKVIEYKFNDEGNKVKITTTTRVRKLANARVSKRAIERRSWLKFGDAVHEDVGSRLTMVSTEEIVLERPKPLGSKAEEPKASGDPLAQFQKGAVLMVCRTCGKKGDHWTSRCPYKDLAAPSEGFVDKPPTSDAAAAAPGSTKGAYVPPGMRAGAERTGSDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAIDQKTGTSRGFGFVNFVNREEAQRAINKLNGYGYDSLILRVEWATPRTT* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0671 291 Pfam Eukaryotic translation initiation factor 3 subunit G 33 159 IPR024675 -
Lan18g0671 291 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 9 291 - -
Lan18g0671 291 MobiDBLite consensus disorder prediction 198 212 - -
Lan18g0671 291 Gene3D - 173 291 IPR012677 -
Lan18g0671 291 CDD eIF3G 40 158 IPR024675 -
Lan18g0671 291 SMART rrm1_1 211 284 IPR000504 GO:0003723
Lan18g0671 291 SUPERFAMILY RNA-binding domain, RBD 201 290 IPR035979 GO:0003676
Lan18g0671 291 MobiDBLite consensus disorder prediction 165 212 - -
Lan18g0671 291 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 212 277 IPR000504 GO:0003723
Lan18g0671 291 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 11 290 IPR017334 GO:0003743|GO:0005737|GO:0005852
Lan18g0671 291 PIRSF Transl_init_eIF-3_RNA-bind 4 291 IPR017334 GO:0003743|GO:0005737|GO:0005852
Lan18g0671 291 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 210 288 IPR000504 GO:0003723
Lan18g0671 291 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 9 291 - -
Lan18g0671 291 CDD RRM_eIF3G_like 211 286 IPR034240 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0671 Lan-Chr18 11884459 11887138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0671 1 291 Eukaryotic Initiation Factors Gene Family AT3G11400 68.731 2.06e-157 440
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0671 K03248 - gmx:100818725 493.041