Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0660 ATGAAGAGGTCTAGAGATGATGGTTTCATGAGTTCTCAACTCAAACGCCCCCTTTTATCTAGAGGAGAAGCGTCTGGGCAACCCCAGATGGTGAATGGAGGTGGTCAGAAACTAACTACTAATGATGCATTAGCATATCTCAAGGCAGTAAAGGACATGTTTCAAGATAAGAAGGACACATATGATGAATTTTTGGAAGTTATGAAAGATTTCAAGGCTCAAAGACTTGATACTACGGGTGTCATAGCAAGAGTCAAGGAGCTGTTTAAAGGGCATAGAGAGCTAATATTGGGATTTAATACCTTCTTGCCAAAGGGATATGAAATCACACTTCCACTGGATGATGAGCAACCTCCCCAAAAGAAGCCTGTTGAATTCGAAGAAGCTATAAATTTTGTGAACAGGATTAAGGTTCTTTTCTTGCAGACTCGGTTCCAAGGTGATGACCGTGTTTACAAGTCATTTCTAGACATATTGAATATGTACAGAAAAGAAAACAAGACTATCACTGAGGTCTACCAGGAGGTTGCTGCACTTTTCCAAGACCACCATGATCTTCTTGATGAGTTTACTCATTTTCTTCCAGACACTTCTGCAGCTGCCTCTACTCATTATGTTACTGCTCGAAATTCTATGCTTCGTGACAGGAGCTCTGCAATGCCAACTGTACGGCAAATGCATGTTGACAAGAGAGAAAGGATCATGGCTTCACATGGTGATCATGGTCTCAGTGTTGACCGTCCTGACCCAGATCATGACAGAGGATTGATGAGGGCAGAAAAGGAGCAGAGGAGACATCTGGAAAAAGAAAAAGACCACAGAGAAGAGAGAGACAGGAGAGAACGGGAAAGGGATGATAAAGATTATGAGCATGATGGTGGTCGGGATAGGGGGCGGTTCTCTCACAAATGGAAATCTGATCATAGGGCTGAAGACTCTGGAGCTGAACCATTGCTTGATACAGATGAAAATTTTGGTACGCGCCCTATGTCATCTACTTGTGATGATAAAAATTCTCTGAAAATTAAGTATAGTCAGGAGCTGGCTTTCTGTGAAAAGGTGAAAGAGAAATTACGAAATCCTGACAACTACCAGGAATTTTTGAAGTGTCTACATATTTACAGCAAGGAAATAATTACCCTACATGAATTGAAGTCATTGGTGGGTGATTTACTTGGAAAATATCCAGATCTTGTGGAGGGATTTAATGATTTTTTGGTACAATCTGAAAAGAATGATGGTGGATTTCTTGCTGGTGTCATGAATAAAAAGTCCTTATGGGGCGAAGGACAGGGATCAAAACCAATGAAGGTTGAAGACAGGGATAGAGATCGAGATCGTTATAGGGATGATGGGGTGAAGGAAAGGGACCGTGAATGCCGAGAAAGGGATAAATCTACTGCAATTGCCAACAAGGATGTTTCAGGTCCTAGGATGTCTCTATATTCCAGCAAGGATAAGTATTGGTCAAAACCTATAAATGAGCTGGACCTTTCTAACTGTGAACAGTGCACTCCCAGTTATCGTCTCCTACCAAAAAATTACCCAATACCTTTAGCTAGCCAGAAAACAGAACTTGGTGCAGAAGTATTGAATGATCACTGGGTGTCTGTTACTTCAGGAAGTGAGGATTATTCCTTTAAACATATGCGCAAAAATCAGTATGAGGAGAGCTTGTTTAGATGTGAAGATGACAGGTTTGAACTTGATATGTTGTTAGAGTCTGTAAATGTGACTACTAAGCGGGTAGAAGAGCTGTTAGAAAAGATCAATAGAAATATACTTAAAGGTGATAGTCCAATTCGTATGGAGGAACACTTAACAGCCCTAAATCTTAGGTGCATTGAACGGTTGTATGGTGACCATGGACTTGATGTGATGGATGTATTAAGGAAGAATGCACCTCTAGCTTTGCCAGTCATATTAACACGCTTGAAGCAGAAACAGGATGAGTGGGCAAGGTGTCGTGCTGATTTCAATAAAGTTTGGGCTGAAATATATGCTAAGAACTATCATAAATCCCTGGATCATCGCAGCTTCTACTTTAAGCAACAGGATACAAAAAGCTTGAGCACTAAAGCCTTACTGGCAGAAATCAAAGAAATTAGTGAGAAGAAGCACAAGGAAGATGACGTTCTTCTTGCAATTGCTGCTGGAAATAGACGGCCTATTCTTCCAAACTTGGAGTTTGAGTATCCTGATCCAGGTATTCATGAAGATTTGTATCAGCTGATAAAATATTCCTGTGGAGAAGTTTGTACAACTGAACAGTTGGATAAAGTCATGAAGATTTGGACAGCATTCTTAGAACCCATGCTTTGTGTTCCTTTTCGACCTCTGGGTGCCGAGGATACAGAAGATGCTGTAAATGCTACCAATAGTTCTGTCAAAAGTGGGATCACATGGGTTAACGGGAGGGATGGTAGTCCTGGCGTTGGTGCTAGTGCAATGAGTCCAAAGCATTTGAATACTTCTGGAAATGGGGATGGCTGTATGCCCTTAGACCAGACAAATTCTAGCAAAGTTTGTCAGTCAAATGGTGATAAGGGGGTTAAAGAAGATGAGTGTCTTGATTCAGACCGTAGTGTGCGTAAAACTGAAACTTTGGGCAGTAATATGCTGAATGACAAAGTGAACATTAGTGCATTCACTCCTGATGAATTATCCAGAGTCCAGAAGCAAGATCACTCCGGTGAACTCTTAGTGAATACTAATGTCTCGCCAGCATCTGGAATGGAGCAATGCAATGGAAGAACAGACATAGACAATGCATCAGGACTTGCTGCTACCCCATCTAGAACTGGTAATGTTACTGTCGAGGGAGTACATGATTTACCTTCATCAGAGGGTGGTGGTTCTAAAAGACCAGGTACATCCACAAATGGGGTCATCAATGAAGGGACCCAAGTTAACAGATACCAAGAAGGATCAGTTCAACACTTCAATGGTGAAAGAGAAGAAGGTGAGTTATCTCCAAATGGAGACTTTGAAGAGGATAACTTGGGAGTTTACCGAGATGGTGATTTGGACGTAGTGCATAAAGCAAAGAATGGTGGTGTGAGTCGGCAATACCAAAATAGACATGGGAAAGAAGTTTTTGATGAAGTCAGAGGAGAAAATGATGTTGATGCTGATGATGAAGGTGAAGAAAGTCCTCACAGGTCATCAGAAGATAGTGAAAATGTTGATGTTTCTGCAAGCGAGTCTGCTGACGGTGTGGAGTGTTTTCGAGAGGAGCACGAGGATGGGGAACATGATAACAAGGCTGAGAGTGAAGGTGAAGCTGAAGGTATGGCTGATGCCCATGATGTTGAAGGAGATGGAACCTCATTGCCATTTTCAGAATGCTTTCTGCTAACTGTAAAGCCTCTGGCAAAGCATGTTCCCCTAGTGTTACATGAGAAAGAAAGGAATTCTCAAGTATTTTATGGAAATGATTCCTTTTATGTGCTGTTTAGACTTCATCAGACATTGTATGAAAGGATACAATCAGCAAAGATTAACTCGTCATCTGCTGAAAGGAAATGGAGGGCTTCAAATGATACAAGCTCTACTGATCAATATGACAGGTTCATGAATGCCCTTTACAATCTACTTGATGGTTCTTCTGATAATGCTAAATTTGAGGACGAATGTCGAGCTATCATTGGAACTCAATCATATCTCTTATTCACATTAGACAAGCTGATTTATAAACTTGTTAAACAGCTTCAAGCTGTTGCCACTGATGAGATGGATAATAAGCTGCTTCAACTATATGCGTATGAGAAATCAAGAAAACCTGGAAGATTTTTTGATGTTGTTTATCATGACAATGCTCGTGTTCTTCTTCATGATGAGAACATATATCGTATTGAATATTCACCTGGACCAATGCAAATGTCTATTCAACTGATGGACCATGGACATGATAAGCCGGAAGTAACTGCTGTGTCTGTGGACCCTAATTTTTCAGCCTATTTGCACAATAACTTCCTCTCTGTTGTTCCTGACAATAAGGAGAAGTCGGGAATTTTTTTGAAGAGGAATAAACGTAGATATGCCTACGATGAAGAATTTTCAAGCCAGGTTATGGAAGAACTAAAAGTTGTGAATGGTCTGGAGTGTAAGATAGCTTGCAGTTCATCTAAGGTTTCATATGTATTAGATACCGAAGACTTTTTGGTTCGGATGAGAAGGAAAAGAAAAGCCTTGCATCTGAAGAGTTCATGCCATGAACAAGCAAAGTCTTCAAACATTTTTTCAAGAAGGGTACAACGGCTTCGCAAATTGTTTACCCGTCCATGA 4287 0.408 MKRSRDDGFMSSQLKRPLLSRGEASGQPQMVNGGGQKLTTNDALAYLKAVKDMFQDKKDTYDEFLEVMKDFKAQRLDTTGVIARVKELFKGHRELILGFNTFLPKGYEITLPLDDEQPPQKKPVEFEEAINFVNRIKVLFLQTRFQGDDRVYKSFLDILNMYRKENKTITEVYQEVAALFQDHHDLLDEFTHFLPDTSAAASTHYVTARNSMLRDRSSAMPTVRQMHVDKRERIMASHGDHGLSVDRPDPDHDRGLMRAEKEQRRHLEKEKDHREERDRRERERDDKDYEHDGGRDRGRFSHKWKSDHRAEDSGAEPLLDTDENFGTRPMSSTCDDKNSLKIKYSQELAFCEKVKEKLRNPDNYQEFLKCLHIYSKEIITLHELKSLVGDLLGKYPDLVEGFNDFLVQSEKNDGGFLAGVMNKKSLWGEGQGSKPMKVEDRDRDRDRYRDDGVKERDRECRERDKSTAIANKDVSGPRMSLYSSKDKYWSKPINELDLSNCEQCTPSYRLLPKNYPIPLASQKTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLEKINRNILKGDSPIRMEEHLTALNLRCIERLYGDHGLDVMDVLRKNAPLALPVILTRLKQKQDEWARCRADFNKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTKALLAEIKEISEKKHKEDDVLLAIAAGNRRPILPNLEFEYPDPGIHEDLYQLIKYSCGEVCTTEQLDKVMKIWTAFLEPMLCVPFRPLGAEDTEDAVNATNSSVKSGITWVNGRDGSPGVGASAMSPKHLNTSGNGDGCMPLDQTNSSKVCQSNGDKGVKEDECLDSDRSVRKTETLGSNMLNDKVNISAFTPDELSRVQKQDHSGELLVNTNVSPASGMEQCNGRTDIDNASGLAATPSRTGNVTVEGVHDLPSSEGGGSKRPGTSTNGVINEGTQVNRYQEGSVQHFNGEREEGELSPNGDFEEDNLGVYRDGDLDVVHKAKNGGVSRQYQNRHGKEVFDEVRGENDVDADDEGEESPHRSSEDSENVDVSASESADGVECFREEHEDGEHDNKAESEGEAEGMADAHDVEGDGTSLPFSECFLLTVKPLAKHVPLVLHEKERNSQVFYGNDSFYVLFRLHQTLYERIQSAKINSSSAERKWRASNDTSSTDQYDRFMNALYNLLDGSSDNAKFEDECRAIIGTQSYLLFTLDKLIYKLVKQLQAVATDEMDNKLLQLYAYEKSRKPGRFFDVVYHDNARVLLHDENIYRIEYSPGPMQMSIQLMDHGHDKPEVTAVSVDPNFSAYLHNNFLSVVPDNKEKSGIFLKRNKRRYAYDEEFSSQVMEELKVVNGLECKIACSSSKVSYVLDTEDFLVRMRRKRKALHLKSSCHEQAKSSNIFSRRVQRLRKLFTRP* 1429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0660 1428 Pfam Sin3 family co-repressor 502 593 IPR013194 -
Lan18g0660 1428 MobiDBLite consensus disorder prediction 944 974 - -
Lan18g0660 1428 Gene3D Paired amphipathic helix 120 198 IPR036600 GO:0006355
Lan18g0660 1428 SMART hdac_interact2seq4b 500 600 IPR013194 -
Lan18g0660 1428 Gene3D Paired amphipathic helix 338 410 IPR036600 GO:0006355
Lan18g0660 1428 Pfam C-terminal domain of Sin3a protein 1142 1388 IPR031693 -
Lan18g0660 1428 Pfam Paired amphipathic helix repeat 362 406 IPR003822 GO:0006355
Lan18g0660 1428 Pfam Paired amphipathic helix repeat 59 103 IPR003822 GO:0006355
Lan18g0660 1428 Pfam Paired amphipathic helix repeat 151 194 IPR003822 GO:0006355
Lan18g0660 1428 ProSiteProfiles PAH domain profile. 122 197 IPR003822 GO:0006355
Lan18g0660 1428 SUPERFAMILY PAH2 domain 36 105 IPR036600 GO:0006355
Lan18g0660 1428 MobiDBLite consensus disorder prediction 236 316 - -
Lan18g0660 1428 SUPERFAMILY PAH2 domain 118 196 IPR036600 GO:0006355
Lan18g0660 1428 MobiDBLite consensus disorder prediction 1016 1101 - -
Lan18g0660 1428 MobiDBLite consensus disorder prediction 428 465 - -
Lan18g0660 1428 MobiDBLite consensus disorder prediction 434 465 - -
Lan18g0660 1428 MobiDBLite consensus disorder prediction 17 36 - -
Lan18g0660 1428 PANTHER SIN3B-RELATED 1 1406 IPR039774 GO:0003714
Lan18g0660 1428 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 1 1406 - -
Lan18g0660 1428 MobiDBLite consensus disorder prediction 1047 1061 - -
Lan18g0660 1428 SUPERFAMILY PAH2 domain 338 406 IPR036600 GO:0006355
Lan18g0660 1428 MobiDBLite consensus disorder prediction 952 974 - -
Lan18g0660 1428 MobiDBLite consensus disorder prediction 983 1002 - -
Lan18g0660 1428 Coils Coil 256 277 - -
Lan18g0660 1428 MobiDBLite consensus disorder prediction 236 334 - -
Lan18g0660 1428 MobiDBLite consensus disorder prediction 801 856 - -
Lan18g0660 1428 Gene3D Paired amphipathic helix 42 104 IPR036600 GO:0006355
Lan18g0660 1428 MobiDBLite consensus disorder prediction 818 846 - -
Lan18g0660 1428 MobiDBLite consensus disorder prediction 1072 1101 - -
Lan18g0660 1428 ProSiteProfiles PAH domain profile. 340 409 IPR003822 GO:0006355
Lan18g0660 1428 ProSiteProfiles PAH domain profile. 36 106 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0660 Lan-Chr18 11722114 11733022 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0660 2 118 WRKY Transcription Factor Family AT4G12020 46.218 6.34e-23 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lan18g0660 Sin3a_C 1.9e-60 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0660 K11644 - gmx:100811928 2227.59