Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0659 ATGAAGAGGTCTAGAGATGATGGTTTTATGAGTTCTCAAATCAAACGCCCCCTTCTGTATCGAGGAGAAGAGTCGGAACAACCCCAGGCGGTGAATGGGGGTGGTCAGAAATTAACTGCTAATGATGCATTGACATATCTCAAGTCAGTAAAGGATATGTTTCAAGATAAGAAGGACACATATGATGAGTTTTTGGAAGTCATGAAAGATTTCAAGGCTCAAAGAACTAATACTGCAGGTGTCATAGCAAGAGTCAAGGAACTGTTTAAAGGGCATAGAGAGCTAATATTGGGATTTAATACCTTCTTGCCAAAGAGATATGAAATCACACTTCCACCTGAGGATGATCAACCTCCTCCAAAGAAGCCTGTTGAATTTGAAGAAGCTATAAATTTTGTGAACAAGATTAAGACTCGGTTTCATGGTGATGATCTTGTTTACAGGTCTTTTCTAGACATATTAAATATGTACAGGAAGGAAAACAAGTCTATCACTGAGGTCTATCAGGAGGTTGCTGCACTTTTCCAAGGCCACTCTGATCTTCTCGTTGAGTTTACCCATTTTCTTCCAGACACTTCTGAAGCCGCCTCTACTCGTTATGCTCCTGCTCGATATTCAATGCTTCGTGATAGGAGCTCTACAATGCTAACAATGCGGCAAATGCATGTGGACAAGAGAGAAAGGACCATGGCTTCACATTGTGATCGTGACCTTAGTGTTGACCGTGCTGACCTAGATCGTGAGAAAGGTTTAGCAAGGGCAGAAAAGGAACAGAGGAGGCATGTGGAGAAGGAAAATGACCGTAGAGAAGAGAGAGACCAGAGAGAAAGGGAAAGTGATAATAGAGATAATCGGCATTACCATAGTCGAAATATGGAACAGTTCTCCCACAAAGGGAAATCTGATCATAGGGATGAAGACTCTGGAGCTGAACCATTGCTTGGTGCAAATGAAAATTTTGGTCTGCGCCCTATGTCATCTACCTTTGATGAGACAAATTCTCTGAAAAGCAAGTATAGTCAAGAACTTGCTTTCTGTGAAAGAGTAAAAGAGACATTACGAAGTCCTGATGACTACCAGGAATTTTTGAAGTGTTTACATATTTATAGCAAGGAAATAATTGCCCGACATGTGTTGCAGTCATTGGTAGGTGATTTACTGGGAAATTCTCCAGATCTTATGGAGGGCTTTAATGAGTTTTTGGTACAATCTGAAAAGAATGATGGTGGATTTCTTGCTGGTATCATGAATAAAAAGTCTATATGGAGTGAAGGACATGGACTGAAACCAATGAAGGTCAAAGACACGGATAGGGGTCGAGACCGCTGTAGGGATGAAGGGATGAAAGAAAGGGGTCGTGAATGCCGGGAAAAGGATAAATCTACTGCTATTGCCAACAAGGGTGTTTCAGGTTCTAAGACATCTCTATTTCCCAGCAAGGATAAGTATTTGTCAAAACCTATCAATGAGCTGGACTTTTCTTATTGTGACCAATGCACACCCAGTTACCGACTCCTGCCAAAAAATTACCCAATACCTCCAGCTAGCCAGAAAACAGAACTTGGTGCTGAAGTATTGAATGACCACTGGGTGTCTGTCACTTCAGGAAGTGAAGACTATTCTTTTAAACATATGCGCAAAAATCAGTATGAAGAGAGCTTGTTTAGATGTGAAGATGACAGGTTTGAACTTGATATGTTGTTAGAGTCTGTAAATGTGACAACTAAACAAGTAGAAGAGCTGTTGGACAAGATTAATAAAAATACAATTAAAGGAGACAGTCCAATCCGTATTGAGGAGCACTTAACAGCTTTAAATCTCAGGTGCATTGAACGGTTATATGGTGATCATGGGATTGATGTGATGGATGTTTTAAGGAAGAATTCACCTCTAGCTTTGCCAGTGATACTAACGCGCTTGAAGCAGAAACAGGATGAGTGGGCAAGGTGTCGTGCTGATTTTAACAAAGTTTGGGCTGAAATATATGCTAAAAACTATCACAAATCTCTTGATCATCGTAGCTTCTACTTTAAGCAACAGGATACTAAAAACCTAAGCACTAAAGCCTTACTGTCAGAAATCAAAGAAATCAGTGAGAAGAAACACAAAGAAGATGATGTTCTTCTTGCAATTGCTGCTGGAAACAGACGGTCTATTCTTCCAAACTTGGAGTTTGATTATCCTGATTCAGATATTCATGAAGATTTGTATCAGCTCGTAAAGTATTCCTGTGGAGAAGTTTGTACAACTGAACAGTTGGATAAAGTTATGAAGATTTGGACAACATTTTTAGAACCTGTGTTTTGTGTTCCTTCTCGGCCCTCAGGTGCCGAGGATACAGAAGATGTTGTCAAGGCTAAGAATAATTCTGTCAAAAGTGTGACTGCATGTGTTGCCCAGAGTGATGATAATCCTGGTGTTGGTGCTACTATAATGAATGGGGATGAGTGTATAAATGGGGATGAGTGTATGCCATCAGATCAATCAAATTGTAGCAAAGCATGGCAATCAAATGGTGATAGTGGGGTTAAAGAAGATAAGTGTCTTGCTTCAGACCGTATTGTGTGTAAAACTGAAACTTTTGGCAGTGTTGTACAGCATGGTAAAATGAATTTTAGTGCATTTACTTATGATGAATCATCAGGAGTCAATAAGCAAGACCCGTCCGGTGAACGGTTAGTGAATGGTAACGTCTTGTCGGCATCTGGAATGGAGCAAAGTAATGGAAGAACAAAAATAGATAATGCATTAGGACTCACTGCTACTCCATCTAGACCTAGTAATTTTGCTGTCAAGGGAGGACTTGATTTGCCTTCATCTGAGGGTGATGACTCTACAAGGCCAGGGACATCAACAAATGGGGCCATCACTGAAGGCAGCGAAGTTCAAAGATACCAAGATGAATCAGTTCGACACTTCAAAAATGAAAGAGAAGAGGGCGAGTTATCCCCAAATGATGATTATGAAGAAGATAACTTTAGAGTATATGAAAATGGTGGTTTGGATGCTGTGCATAAAGGAAATGATGGTGATGTGAGCCGGCAACGCCAAAATAGTCATGGGGAAGAAGTTTGTGGTGAAGCCAGAGGAGAAAACAATGCTGATGCTGATGATGAAGGTGAAGAAAGTCTTCACAGGTCATCAGAGGATAGTGAAAATGCTTCTGAAAATGTTGATGTTTCTGGAAGTGAGTCTGCTGATGGTGAGGAGTGTTCTCGAGAGGAGCATGGGGATGGGGAACGTGATGAGAAGGCCGAGAGTGAAGGTGAAGCTGAAGGAATGGCTGGTGCCCATGATGTTGAAGGTGATGGAGCCTCATTGCCGTTTTCAGAACGCTTTCTGCTAACTGTAAAGCCTCTGGCAAAGCATGTTCCCATGCTGTTACATGAGAAAGAAAGGAATTCACAAGTTTTTTATGGAAACGATTCCTTTTATGTGTTGTTTAGACTTCATCAGACATTGTATGAGAGGATTCGATCAGCAAAGATTAACTCATCATCTGCTGAAAGGAAATGGAGGGCTTCAAATGATACAAGCTCCACAGATCAATATGACAGGTTCATGAATGCCCTTTACAGTTTACTGGATGGTTCTTCAGATAATACAAAATTTGAGGATGATTGCCGAGCAATTATCGGAACTCAATCATATCTCCTATTCACATTAGACAAGCTGATATATAAACTTGCTAAACAGCTCCAAGTTGTTGCCTCTGATGAGATGGATAGTAAGCTCCTCCAATTATATACATATGAGAAATCAAGAAAACCTGGAAGATTTGTCGACATTGTTTATCATGAAAATGCTCGTGTTCTTCTTCAGGATGAGAACATATATCGTATTGAATATTCACCTGGACCAATGCAATTGTCCATTCAACTGATGGATCATGGACTTGATAATCCTGAAATGGCTGGTGTGTCGGTGGACCCGAGTTTTTCATCCTATCTGCACAATGATTTCCTCTCTGTTGTCCCTGACAAAAAGAAATCAAGAATTTTTTTGAGGAGGAATAAACGTAGATATGCTCCTAGTGATGAATTTGCAAGTCAAGCTATTGCAGGACTACAAGTTATTAATGGTCTCGAGTGTAAGATAGCTTGCAATTCTTCTAAGGTGTCATATGTTTTAGATACGGAAGATTACTTGTATCGCATGAAAAAGAACAGAAGAGTCTTGCATCAGAAGAGTTCATGCCATGAACAGACAAAGTCTTCAAACATTTGTGCAAGAAGACAACAGCGGTACCATAAATTGTTTTCCATTACATGA 4272 0.4031 MKRSRDDGFMSSQIKRPLLYRGEESEQPQAVNGGGQKLTANDALTYLKSVKDMFQDKKDTYDEFLEVMKDFKAQRTNTAGVIARVKELFKGHRELILGFNTFLPKRYEITLPPEDDQPPPKKPVEFEEAINFVNKIKTRFHGDDLVYRSFLDILNMYRKENKSITEVYQEVAALFQGHSDLLVEFTHFLPDTSEAASTRYAPARYSMLRDRSSTMLTMRQMHVDKRERTMASHCDRDLSVDRADLDREKGLARAEKEQRRHVEKENDRREERDQRERESDNRDNRHYHSRNMEQFSHKGKSDHRDEDSGAEPLLGANENFGLRPMSSTFDETNSLKSKYSQELAFCERVKETLRSPDDYQEFLKCLHIYSKEIIARHVLQSLVGDLLGNSPDLMEGFNEFLVQSEKNDGGFLAGIMNKKSIWSEGHGLKPMKVKDTDRGRDRCRDEGMKERGRECREKDKSTAIANKGVSGSKTSLFPSKDKYLSKPINELDFSYCDQCTPSYRLLPKNYPIPPASQKTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKQVEELLDKINKNTIKGDSPIRIEEHLTALNLRCIERLYGDHGIDVMDVLRKNSPLALPVILTRLKQKQDEWARCRADFNKVWAEIYAKNYHKSLDHRSFYFKQQDTKNLSTKALLSEIKEISEKKHKEDDVLLAIAAGNRRSILPNLEFDYPDSDIHEDLYQLVKYSCGEVCTTEQLDKVMKIWTTFLEPVFCVPSRPSGAEDTEDVVKAKNNSVKSVTACVAQSDDNPGVGATIMNGDECINGDECMPSDQSNCSKAWQSNGDSGVKEDKCLASDRIVCKTETFGSVVQHGKMNFSAFTYDESSGVNKQDPSGERLVNGNVLSASGMEQSNGRTKIDNALGLTATPSRPSNFAVKGGLDLPSSEGDDSTRPGTSTNGAITEGSEVQRYQDESVRHFKNEREEGELSPNDDYEEDNFRVYENGGLDAVHKGNDGDVSRQRQNSHGEEVCGEARGENNADADDEGEESLHRSSEDSENASENVDVSGSESADGEECSREEHGDGERDEKAESEGEAEGMAGAHDVEGDGASLPFSERFLLTVKPLAKHVPMLLHEKERNSQVFYGNDSFYVLFRLHQTLYERIRSAKINSSSAERKWRASNDTSSTDQYDRFMNALYSLLDGSSDNTKFEDDCRAIIGTQSYLLFTLDKLIYKLAKQLQVVASDEMDSKLLQLYTYEKSRKPGRFVDIVYHENARVLLQDENIYRIEYSPGPMQLSIQLMDHGLDNPEMAGVSVDPSFSSYLHNDFLSVVPDKKKSRIFLRRNKRRYAPSDEFASQAIAGLQVINGLECKIACNSSKVSYVLDTEDYLYRMKKNRRVLHQKSSCHEQTKSSNICARRQQRYHKLFSIT* 1424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0659 1423 MobiDBLite consensus disorder prediction 920 1103 - -
Lan18g0659 1423 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 1 1404 - -
Lan18g0659 1423 SUPERFAMILY PAH2 domain 118 191 IPR036600 GO:0006355
Lan18g0659 1423 PANTHER SIN3B-RELATED 1 1404 IPR039774 GO:0003714
Lan18g0659 1423 Pfam C-terminal domain of Sin3a protein 1138 1383 IPR031693 -
Lan18g0659 1423 Pfam Paired amphipathic helix repeat 357 401 IPR003822 GO:0006355
Lan18g0659 1423 Pfam Paired amphipathic helix repeat 59 103 IPR003822 GO:0006355
Lan18g0659 1423 Pfam Paired amphipathic helix repeat 146 189 IPR003822 GO:0006355
Lan18g0659 1423 Gene3D Paired amphipathic helix 332 405 IPR036600 GO:0006355
Lan18g0659 1423 MobiDBLite consensus disorder prediction 1007 1053 - -
Lan18g0659 1423 MobiDBLite consensus disorder prediction 964 996 - -
Lan18g0659 1423 ProSiteProfiles PAH domain profile. 36 106 IPR003822 GO:0006355
Lan18g0659 1423 SUPERFAMILY PAH2 domain 337 402 IPR036600 GO:0006355
Lan18g0659 1423 SUPERFAMILY PAH2 domain 36 105 IPR036600 GO:0006355
Lan18g0659 1423 Pfam Sin3 family co-repressor 498 589 IPR013194 -
Lan18g0659 1423 ProSiteProfiles PAH domain profile. 122 192 IPR003822 GO:0006355
Lan18g0659 1423 MobiDBLite consensus disorder prediction 1066 1097 - -
Lan18g0659 1423 MobiDBLite consensus disorder prediction 249 311 - -
Lan18g0659 1423 MobiDBLite consensus disorder prediction 249 328 - -
Lan18g0659 1423 Gene3D Paired amphipathic helix 121 193 IPR036600 GO:0006355
Lan18g0659 1423 ProSiteProfiles PAH domain profile. 335 404 IPR003822 GO:0006355
Lan18g0659 1423 MobiDBLite consensus disorder prediction 428 452 - -
Lan18g0659 1423 Gene3D Paired amphipathic helix 42 104 IPR036600 GO:0006355
Lan18g0659 1423 Coils Coil 252 274 - -
Lan18g0659 1423 SMART hdac_interact2seq4b 495 595 IPR013194 -
Lan18g0659 1423 MobiDBLite consensus disorder prediction 943 963 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0659 Lan-Chr18 11705800 11719162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0659 25 137 WRKY Transcription Factor Family AT4G12020 48.696 2.40e-24 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lan18g0659 Sin3a_C 2e-59 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0659 K11644 - gmx:100811928 2132.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g0659 18 11705800 11719162 Lan6g0626 6 5502572 5526577 LSH