Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0654 ATGGATCCACTCCCAATGATGAACGACACCACTTTCACCAACGGTGGCCCCTCCAATACGCCGCCGTTTCACTTGTCTGAGATCTGGCAGTTTCCCCCGCCGGCTATCACTGAATCCGGGATAGGGCCGAGAAGACCACCGTTCGAGCAAGGGTTGACCCACTACATTGGTTTCGGTCCGAACCGGGACGTTCCGGGTAATGACCCGATTAATTCGGAGCATATGGCGCCAATTCGAAACAGGAAGAAGCGTGACTCTGATGAGGAATCATTTAAGGCCGCTTCCACCAGCAATGGCGGTGGTAACAATGCCATGAGTGATGGTGGTGATGGAAAACGGGTGAAAGCAACGGGGAACAATAGAAATGAGAGTGGTAAATGTGAAACAGAAACGAGTTCAGGAAAGCATGAGGAGCAAAAACAAACAACTACAGAGCCTCCTCCTAAGCAAGATTACATCCATGTGAGAGCTAGAAGGGGTCAAGCTACTGATAGCCACAGTCTTGCAGAAAGAGCTAGAAGAGAAAAGATCAGTGAAAGGATGAAAATTCTTCAGGATTTAGTCCCTGGTTGTAACAAGGTTATTGGGAAAGCACTGGTCCTTGATGAGATAATTAATTATATTCAATCACTTCAGGGCCAAGTAGAGTTTTTGTCAATGAAACTTGAAGCAGTAAATTCAAGACTGACCCCTGGCATCGAAGTTTTTCCTCCTAAAGATTTTGATCAGCAGACATTTGATACAGCCGGCATGCCATTCACTTCACACGCTTCAAGAGAGTATAGCCGGGGCTCCTCACCCGAGTGGTTACATATGCAGGTAGGAGGCGGTTTTGAAAGAACAACATAG 849 0.4711 MDPLPMMNDTTFTNGGPSNTPPFHLSEIWQFPPPAITESGIGPRRPPFEQGLTHYIGFGPNRDVPGNDPINSEHMAPIRNRKKRDSDEESFKAASTSNGGGNNAMSDGGDGKRVKATGNNRNESGKCETETSSGKHEEQKQTTTEPPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQGQVEFLSMKLEAVNSRLTPGIEVFPPKDFDQQTFDTAGMPFTSHASREYSRGSSPEWLHMQVGGGFERTT* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0654 282 MobiDBLite consensus disorder prediction 7 25 - -
Lan18g0654 282 SMART finulus 167 217 IPR011598 GO:0046983
Lan18g0654 282 MobiDBLite consensus disorder prediction 128 144 - -
Lan18g0654 282 MobiDBLite consensus disorder prediction 75 91 - -
Lan18g0654 282 Gene3D - 158 231 IPR036638 GO:0046983
Lan18g0654 282 PANTHER BNAC05G07950D PROTEIN 1 282 - -
Lan18g0654 282 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 282 IPR024097 GO:0006355
Lan18g0654 282 Pfam Helix-loop-helix DNA-binding domain 165 212 IPR011598 GO:0046983
Lan18g0654 282 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 159 229 IPR036638 GO:0046983
Lan18g0654 282 MobiDBLite consensus disorder prediction 1 152 - -
Lan18g0654 282 Coils Coil 208 228 - -
Lan18g0654 282 CDD bHLH_AtBPE_like 151 236 - -
Lan18g0654 282 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 161 211 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0654 Lan-Chr18 11662986 11671435 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0654 1 240 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 53.150 1.76e-67 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan18g0654 HLH 2.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0654 - - lang:109332242 584.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0629 17 5409020 5412159 Lan18g0654 18 11662986 11671435 LSH
Lan18g0654 18 11662986 11671435 Lan6g0633 6 5573549 5577081 LSH
Lan18g0654 18 11662986 11671435 Lan1g0980 1 20322741 20324155 PCT
Lan1g0980 1 20322741 20324155 Lan18g0654 18 11662986 11671435 PCT