Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0644 ATGGTGCTTCATCACAGAAAGTTGGCATCAGACTCATCATTTGACTGTGGATACTATTGTAATAATGAACAAGCTTGTTCACTCAAGAAAAACTGTGATGATTGCATCAAAAACTGCAATATCAATAATACTACTCCATCACAAAGCAAACACTTTACAATCCCAACCTATTTGATCATCATTTTTGCTCTTGTAGCCACTGCTTTAATTGTTCTTTGTTGCTATGCGATCTATGTCAAGTTTTTCTCTCATAGGAACAGGTCAAGAAGGAGAATTTTATCACAACAACAAGAGAACCATGATGATGAGTTTCTTGATGAAGAAGAACAACATGGTCCTATGGTTGACCATCCTATTTGGTATATCAGAACCACCGGTCTGAACCAATCAATCATCACTGCAATCACAGTTTGTAAGTATAAACAAGGTGAGGGTTTGATTGAAGGAACAGATTGTTCTGTTTGTTTGAGTGAGTTTCAAGAAGATGAAAGTCTTAGACTTTTGCCTAAGTGTAACCATGCTTTTCATTTACCTTGTATTGATACTTGGCTTGCATCACACACTAACTGCCCCTTGTGTAGGGCTCCTATAGTTACTAATGCTGCAAGGATTCCATCCATGGAATCTAATGTTCCTGATTCAAGTTCTATAGAAAATTCTCATATGGGTAGTTTGGAAAATAGTGATGACGGTGGAAGTGAAATTGTTAATAGTGATGGTGTGTTGAGTAATGGTGCAGAGGAAGAAGAAGAAGTGGAAGTTGAAGATGGAATAAGGGTGGTGAATATGCAGCAGCCAAGAAGATCAGTGTCTTTAGATTCTTCTGCTGCTGCTAAGATCAATCTTGCACTTGCAACAGTTCTATCAATGGAATGTTCTAATGGAAATTCAAAGAGGGTTGGTGGAAATGTGAATATGGTAAGTGGTGTAAAAGGGAGTTCTTCTTCAAGGACAAGATATCTGCAAAGTGCACCTAGTTCAATGAAGAGATCAAGATCCTTCAATGGGAAACACTTACTGTCCAAGTATAGCCGTAGTCAGAAGAAGCCTAATGCTCCTCCAGTGAGAAGCTTTTGA 1077 0.3835 MVLHHRKLASDSSFDCGYYCNNEQACSLKKNCDDCIKNCNINNTTPSQSKHFTIPTYLIIIFALVATALIVLCCYAIYVKFFSHRNRSRRRILSQQQENHDDEFLDEEEQHGPMVDHPIWYIRTTGLNQSIITAITVCKYKQGEGLIEGTDCSVCLSEFQEDESLRLLPKCNHAFHLPCIDTWLASHTNCPLCRAPIVTNAARIPSMESNVPDSSSIENSHMGSLENSDDGGSEIVNSDGVLSNGAEEEEEVEVEDGIRVVNMQQPRRSVSLDSSAAAKINLALATVLSMECSNGNSKRVGGNVNMVSGVKGSSSSRTRYLQSAPSSMKRSRSFNGKHLLSKYSRSQKKPNAPPVRSF* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0644 358 SUPERFAMILY RING/U-box 145 200 - -
Lan18g0644 358 MobiDBLite consensus disorder prediction 209 240 - -
Lan18g0644 358 MobiDBLite consensus disorder prediction 209 256 - -
Lan18g0644 358 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 202 IPR013083 -
Lan18g0644 358 SMART ring_2 152 193 IPR001841 -
Lan18g0644 358 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 44 348 - -
Lan18g0644 358 Pfam Ring finger domain 151 194 IPR001841 -
Lan18g0644 358 ProSiteProfiles Zinc finger RING-type profile. 152 194 IPR001841 -
Lan18g0644 358 CDD RING-H2_PA-TM-RING 151 194 - -
Lan18g0644 358 MobiDBLite consensus disorder prediction 303 358 - -
Lan18g0644 358 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 44 348 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0644 Lan-Chr18 11520608 11522020 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0644 46 258 C3H Transcription Factor Family AT1G72220 45.070 4.05e-52 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0644 - - mtr:MTR_4g093830 362.844