Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0624 ATGGGTTCTTTGTGGTTTTTCAATCTGTTTCTCAAATGCATTGACCATTTTGCATGGCCTCTTGTTGCTTTGGGGTATCCTCTATGTGCTTCCATACAAGCTATTGAGACTGACTCATATACAGAAACTAGGAATTTGATCTCATATTGGATACTTTTCTCATTAATATACCTCTTTGAGTATGCTTTCATGAGGCTTCTTCAATGGGTCCAGTTCTGGCCTTACATTAAGCTAATGGTCATCTTCTGGCTCATCATACCTGACTTCGGACGGAGTTCTTCCGTTTATAATCACCTTGTCCATTCAAGCATCTCCTTGAAACCACAAGCAGTCATAAGTAGGTTAAAGAACTGGAAGAAGTTATTTGTCAAGAAACAGGACTTTTTACAGCATGCAGAGAGATATATAGAAGAGAATGGAACTGAAGCCTTAGCAAAACTGATTGCTAGTAAGGATATTCCTAGTGTGCCTAACCTTGCACCAATTCAGAATGCTTCATCGGCCATGGTGGGGAAAGACACAAATAGTGTAGAGCTTCCTCAGAGTTCAACAAACAAGGAAGTGCAGAAAGAGTGGACTTGTGCTATATGTCAAGTGACAACTACGAGTGAGAATAACTTGAATTCCCATCTTCATGGGAGGAAACACAAGGATGCCTGTGAAGCTCTGAAAGCGAAGATTAAGCTTGCTCCACATAAGCTGAAATTTGTTGAGGAATTTAAACAGATAAATATTTCGCATGCAGATGTAGAGCCTGAGAATATCCAAATTTTACGTGCAAAAGAGCATGCTCAAACAAGCAGGGAGACTGAGAAGAGTATACTTAGTGATGGCGTAAAGCTGAGATCAACTAGTACTCAGGAGAATAAAAGAACACATGTTAGTGTTCTTGCACCTGCAAATAAGAATCATAAGAAGGTGCAAGCACTATCTAAAAACCCGGGTAAACCTGTTTTGGTGATTCCTCCCAAATTAAGATGTGAAGTCTGCAATGTTAGTTGCACTAGTAAGGGTGACTTGGAATCTCATTTAACTGGTAGGAGGCACTTGGCTCAAGCTGAAAAACTAACCTGA 1074 0.4013 MGSLWFFNLFLKCIDHFAWPLVALGYPLCASIQAIETDSYTETRNLISYWILFSLIYLFEYAFMRLLQWVQFWPYIKLMVIFWLIIPDFGRSSSVYNHLVHSSISLKPQAVISRLKNWKKLFVKKQDFLQHAERYIEENGTEALAKLIASKDIPSVPNLAPIQNASSAMVGKDTNSVELPQSSTNKEVQKEWTCAICQVTTTSENNLNSHLHGRKHKDACEALKAKIKLAPHKLKFVEEFKQINISHADVEPENIQILRAKEHAQTSRETEKSILSDGVKLRSTSTQENKRTHVSVLAPANKNHKKVQALSKNPGKPVLVIPPKLRCEVCNVSCTSKGDLESHLTGRRHLAQAEKLT* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0624 357 Gene3D Classic Zinc Finger 300 355 - -
Lan18g0624 357 Gene3D Classic Zinc Finger 172 222 - -
Lan18g0624 357 SMART ZnF_U1_5 189 223 IPR003604 GO:0003676|GO:0008270
Lan18g0624 357 SMART ZnF_U1_5 322 356 IPR003604 GO:0003676|GO:0008270
Lan18g0624 357 PANTHER HVA22-LIKE PROTEINS 1 151 IPR004345 -
Lan18g0624 357 PANTHER HVA22-LIKE PROTEINS 256 356 IPR004345 -
Lan18g0624 357 PANTHER HVA22-LIKE PROTEINS 153 239 IPR004345 -
Lan18g0624 357 MobiDBLite consensus disorder prediction 262 276 - -
Lan18g0624 357 Pfam Zinc-finger of C2H2 type 192 216 - -
Lan18g0624 357 Pfam Zinc-finger of C2H2 type 326 349 - -
Lan18g0624 357 Pfam TB2/DP1, HVA22 family 27 101 IPR004345 -
Lan18g0624 357 SUPERFAMILY beta-beta-alpha zinc fingers 183 226 IPR036236 -
Lan18g0624 357 SMART c2h2final6 325 349 IPR013087 -
Lan18g0624 357 SMART c2h2final6 192 216 IPR013087 -
Lan18g0624 357 MobiDBLite consensus disorder prediction 262 290 - -
Lan18g0624 357 ProSitePatterns Zinc finger C2H2 type domain signature. 327 349 IPR013087 -
Lan18g0624 357 SUPERFAMILY beta-beta-alpha zinc fingers 320 356 IPR036236 -
Lan18g0624 357 PANTHER TB2/DP1, HVA22 FAMILY PROTEIN 1 151 - -
Lan18g0624 357 PANTHER TB2/DP1, HVA22 FAMILY PROTEIN 153 239 - -
Lan18g0624 357 PANTHER TB2/DP1, HVA22 FAMILY PROTEIN 256 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0624 Lan-Chr18 11327813 11332218 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan18g0624 TB2_DP1_HVA22 1.4e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0624 - - lang:109333068 415.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g0624 18 11327813 11332218 Lan18g0624 18 11327813 11332218 ECH
Lan18g0624 18 11327813 11332218 Lan12g1257 12 18489255 18491302 PCT
Lan18g0624 18 11327813 11332218 Lan1g1033 1 20629946 20632056 PCT