Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0623 ATGTTACAGCTATCTGTTCAAAGAGTGAAGAAGTTCAATTCTCTGATGCCTCAGATCTATGCTTTGGGAACTTCCCATTTCTCAACAGCTGCGGACCCATCTTCCATTAAGCTTAATCCTCCGAGAGTTCCAAATCTTATTGGAGGGAGTTTTGTTGACTCAAAAGCAGCAACTTTCATCGATGTTATAAACCCTGCAACCCAAGAAGTTGTTTCACAAGTTCCCTTGACTACAGATGATGAATTTAAATCTGCTGTATCATCAGCAAAGAAGGCATTCTCATCATGGCGCAATACTCCAATTACGACACGCCAACGTGTGATGTTGAAGTTCCAGGAGCTTATACGCAGAGATATGGATAAACTTGCCCGGAATGTGACCACAGAACAAGGAAAGACATTAAAGGATGCACAAGGAGATGTATTTCGTGGTTTAGAGGTGGTGGAACATGCTTGTGGGATGGCAACTCTACAAATGGGAGAGTATGTTTCTAATGTATCACATGGAATTGATACTTTCAGCATTAGAGAACCACTTGGTGTTTGTGCTGGTATTTGTCCTTTCAATTTTCCCGCAATGATTCCCTTATGGATGTTCCCAGTGGCTGTTACTTGTGGTAACACCTTTATTCTAAAGCCATCAGAGAAAGACCCTGGTTGTTCCTTATTGCTTGCAGAATTGGCACTGGAGGCTGGTTTACCTGAAGGTGTCTTAAATATAGTTCACGGAACTCATGATATTGTGAATGCTATCTGCGATGACGACGACATCAGAGCTGTATCTTTTGTTGGTTCAAATGTTGCTGGAATGCACATATATTCAAGAGCATCAGCTAAAGGAAAACGTGTTCAGTCCAATATGGGGGCCAAAAATCATGCAATTGTCATGCCAGATGCAAATGTTGATGCTACTCTAAATGCTTTAATTGCTGCTGGTTTTGGTGCTGCTGGACAAAGGTGCATGGCTCTCAGCACCGTTGTTTTTGTTGGAGGCTCACAGTCATGGGAAAACAAACTTATTGAGCGTGCCAAAGCTCTTAAAGTTAACGCTGGAATTGAACCTGATACAGATCTTGGTCCAGTCATCAGCAAACAGGCAAAAGAGCGAATACATAGCTTAGTTCAATCTGGTGTTGAAGATGGTGCCAGACTACTGCTTGACGGAAGAAATATAGTGGTCCCAGGATATGAGTCTGGCAATTTTGTTGGCCCAACCATTTTATCAAATGTCACTGCCACCATGGAGTGTTACAAGGATGAAATATTTGGCCCAGTTCTTCTCTTCATGGAGGCTGATAGCTTGGAAGAGGCTATAAACATTATCAACAATAACAAGTATGGAAATGGCGCTTCTATATTCACTACATCTGGTGTTGCTGCGAGGAAATTTCAGACCGAGATTGAGGCTGGGCAGGTTGGCATCAACGTTCCAATTCCAGTTCCTTTGCCCTTTTTCTCATTTACTGGCAACAAGGCGTCGTTCGCAGGCGATCTCAATTTCTACGGCAAGGCAGGGGTTAACTTTTTTACACATATCAAAACCGTAACCCAGCAATGGAAGGATTCAGCTGGTGATAGCAAGATTAACATGGCTATGCCAACTTCCCAAAAATCTTCATAG 1620 0.4259 MLQLSVQRVKKFNSLMPQIYALGTSHFSTAADPSSIKLNPPRVPNLIGGSFVDSKAATFIDVINPATQEVVSQVPLTTDDEFKSAVSSAKKAFSSWRNTPITTRQRVMLKFQELIRRDMDKLARNVTTEQGKTLKDAQGDVFRGLEVVEHACGMATLQMGEYVSNVSHGIDTFSIREPLGVCAGICPFNFPAMIPLWMFPVAVTCGNTFILKPSEKDPGCSLLLAELALEAGLPEGVLNIVHGTHDIVNAICDDDDIRAVSFVGSNVAGMHIYSRASAKGKRVQSNMGAKNHAIVMPDANVDATLNALIAAGFGAAGQRCMALSTVVFVGGSQSWENKLIERAKALKVNAGIEPDTDLGPVISKQAKERIHSLVQSGVEDGARLLLDGRNIVVPGYESGNFVGPTILSNVTATMECYKDEIFGPVLLFMEADSLEEAINIINNNKYGNGASIFTTSGVAARKFQTEIEAGQVGINVPIPVPLPFFSFTGNKASFAGDLNFYGKAGVNFFTHIKTVTQQWKDSAGDSKINMAMPTSQKSS* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0623 539 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 23 538 IPR010061 GO:0004491
Lan18g0623 539 TIGRFAM MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 45 519 IPR010061 GO:0004491
Lan18g0623 539 SUPERFAMILY ALDH-like 39 520 IPR016161 GO:0016491
Lan18g0623 539 PANTHER METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE 23 538 - -
Lan18g0623 539 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 313 324 IPR016160 GO:0016491
Lan18g0623 539 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 288 488 IPR016163 GO:0016620
Lan18g0623 539 Pfam Aldehyde dehydrogenase family 51 515 IPR015590 GO:0016491
Lan18g0623 539 CDD ALDH_F6_MMSDH 43 519 IPR010061 GO:0004491
Lan18g0623 539 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 47 496 IPR016162 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0623 Lan-Chr18 11321085 11326739 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0623 15 503 Aldehyde Dehydrogenase Gene Family AT2G14170 80.982 0.0 823
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0623 K00140 - gmx:100791508 951.044
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0654 17 5659494 5666136 Lan18g0623 18 11321085 11326739 LSH