Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0598 ATGGGACATGCATGTGATGATAGGCTATACATGTCTCTAGATGAGTTGTTGGATTTTAATGGTGAAAATGGTAGCAACAGGAAAATGATGGGGAAGAAGAACTATGATAATGGTGAAACAACAGTGTTCAAATCCAAGAATCTTGAAACTGAAAGGAGGAGGAGGGAGAAACTTAGTAGTAGGCTTTTGATGCTGCGTTCATTAGTACCCATCATCACAAATATGAACAAATTAACCATTGTTGATGATGCTATCACATACATCAAGGTGCTGCAAGACAAAGTACAAAATCTCAGCAAAAAGCTTTATGAAATGGATGCAACTTTAGAGGCAGAAATACCAGAGCCAAAGATCCTTGAAATTGATGCTGCACAAGAGATGAAGAATTGGGGTATACAGGAAGAGGTTAGGGTGACACAAATTGATGGGAATAAACTCCGGGTCAAGATGGTCATTGAGAAGAAGAGAGGAAGATTGGGAAAATTGATGGAGGCCATGAATGGTTTAGGCATTGAGTTTATAGACACCAATGTAACAACGATAAAAGGAGCATTTCTGATTACTGCATGCATAAAGGGCATGGATGGGGAAACACTTGAAGCTCAGCAAACTGAAGAGGTGCTGATAGATATTAACAGTGCCACTTAG 648 0.3951 MGHACDDRLYMSLDELLDFNGENGSNRKMMGKKNYDNGETTVFKSKNLETERRRREKLSSRLLMLRSLVPIITNMNKLTIVDDAITYIKVLQDKVQNLSKKLYEMDATLEAEIPEPKILEIDAAQEMKNWGIQEEVRVTQIDGNKLRVKMVIEKKRGRLGKLMEAMNGLGIEFIDTNVTTIKGAFLITACIKGMDGETLEAQQTEEVLIDINSAT* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0598 215 Pfam Helix-loop-helix DNA-binding domain 46 92 IPR011598 GO:0046983
Lan18g0598 215 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 14 211 - -
Lan18g0598 215 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 44 105 IPR036638 GO:0046983
Lan18g0598 215 Gene3D - 37 107 IPR036638 GO:0046983
Lan18g0598 215 PANTHER TRANSCRIPTION FACTOR DYT1 14 211 - -
Lan18g0598 215 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 42 91 IPR011598 GO:0046983
Lan18g0598 215 SMART finulus 48 97 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0598 Lan-Chr18 10983980 10985284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0598 43 211 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G21330 44.633 1.58e-40 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan18g0598 HLH 2.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0598 - - gmx:100806159 218.009