Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0590 ATGGCTTCTGTTACCTCTTCTTCTTCCTCCTCCAACCTCTGCTATAACCCTCAATGCAAGCAATTCAAGTCACAATTTTCCAGGGAAGGTTGGAAGCTCCGTTCCGGTGATCAGGCCCAGCTTTGCGATCGATGCAGTTCTGCTTTTGAAGAAGGAAGATTTTGTGAAACTTTTCACTTGAATGCTTCTGGTTGGAGGAATTGTGAGATTTGTAGGAAGGGGATTCATTGTGGATGTATTGTCTCAGCTAATTCCTTTAGGTTGTTGGATCCTGGAGGAATTGAATGCATTGGATGTGCAAGGGAACATCTTCTTTTGTCATCAATCCAGCCGTTGCCAAAATCCTTTTCCTTTCAAAATCGTTTACTATCTGAGAGACTTGGAGATTTGTCTGCGAAAGGTTGGAATCAATTAGGTGGATCGGGTCCTGTACAACCATGGAAGCAAGTACCCAGTCCATTCAATTCAATTTCTTCACCTAACCTGCACCCAGATGTGTCCTCTATAGTTGATTTATCACATAATTTTGATAAAATGTATGGAAATGAAAAGTTACCTTTCACTTCCATGGAGAAGAAAAACAAGGACCTGTCTGGAACATCTAGTTGGAGTGCTACGCTTGGTTCACGGGAAATGATGCTCATGAACGGGATGAGGAATGAGGACAAATCAAGCTCATGTTTAAACATTTGCCAGCAGCTTCCTTCTCTGAAGGAAGATTCAGCTCTGCGACCATTTGGTTTGTCTGTGCCTTATGCATCTCCAAATGAAAGAAATAGTCAGGTTGGGGCAACCAAAAGTCATCCACAGCAAAGTCCTCCTTCTTGTCCAGGAAAGCAATTTAGTGGCACAAGTCATTTACCACTTGACACATCAGGTGAAACCCAGGCTCACAATGGATGGCCTCATGTGGATACTCTGGGAAGAAACCAGTTATTTCCACAGTACTGGCCAAGGTGTACTGAACTGGAGCTACAGCAATTATCTATAGATTCTAATTCTATCATTACTCCATTGTTTCAAAAAACCTTGAGTGCTAGTGATGCTGGGCGAAATGGGCGTTTAGTGCTACCAAAAAATTGTGCCGAGGCCTACTTCCCACCAATTTCTCAGCCCGAAGGATTGCCACTTAAGATCCTTGATACAAAAGGCAAAGAATGGGTATTTCAATTTCGCTTTTGGCCCAACAATAATAGCAGAATGTATGTTTTAGAAGGGGTCACTCCTTGCATACAGTCAATGCAGTTGCAAGCAGGTGACACAGTAACATTTAACCGGTTGGAGCCAGAAGGAAGGTTGGTTATGGGATTTCGAAAGTCTTCAAGTGCTACCCCATCCGATCAGGACAGCAGAACATATAAAAATGGAAATGGATTTTCTGCACACGGTGATGCTGAATTAGCAAAAGAAGCACTGGGGAGCAAATCTTCAATCTCTAGAAAGAGAAAGAGCAGCATCTTGGGTTCAAAGAGTAAACACCTATTACATCTGAATATCACATTGCAAGAAGCTCAAGGCCTGCTCCGCCCCCCTCCTAACCATGTTGCCAGCATTGTGGTCATTGAAGGTTTTGAATTCGAGGAATATGAGGATGCTCCAGTCCTTGGGAAACCAACCATTTTTACCACTGGTAATGATGGTGAAAATATCCGATGGGCTCAATGTGAATATTGTCTCAAGTGGCGCAAATTGCCTGCAAGTGCACTTCTTCCATCAAAATGGACGTGTCCTGATAATTCGTGGGATCCAGAAAGATCCTCTTGTTCATCAGCACAAGAGCTGACAGCTGAAGAGCTTGAGAATTTGCTGTCCTGTAAATCAGCTGTTTCCAAGAAAAAGAAGGCTACTAAGAAGGATCTAGATAATATTGAAGCTTCAGAGGGACTTGACACGCTTTCCAACCTTGCTATCCTAGGAGAGGATGAGACACTCCCTGCATACGAACAGGCTATAAAAAAACACCCACGTCATAAACCTGGCTGCTCTTGCATTGTCTGCATTCAACCTCCCAATGGAAAGGTACCCCAGCATAAGCAGACATGCACCTGTAATGTCTGCTTAACAGTACAGTGTAGTTTCCGCACCCTGATGTTAAGGCGTGAGACAAAACAATCAGAAAGAGAAGCAGAGACAATACAGAACAATCAACAGAAGCAGCAGCCTCAGGCATTACCTTCGTCTGTGATTTTGATTGATGATAATTCACTGCCTTATAGTAACAACATGGGAGTCAGTAGCCCAAATGAGAACAGGGAGGGGACTGACGGTAATCCAAACCAGAACAGGGAGGGGGGTGATGGTTCTAATGACGACCCCGATCAAATAAAGCCAACTGCTTTGCCATTCAAAGGCCAGATTGACCTCAATATCCAGCCAGCACGAGAGGAAGAGTTATCACCTTGTTCAGATTTCGGTGGCATGATGAAGGCACTCCATGGTGCTACTGAAAGGTATCTCAGGCAGCAGAGTATGTTGAACTCGGGTTGTGCCGATTCATCAAGCAGTCAGTCACAGCGAGTTGGGGATGGAATGAGTGAAGTGAAACATAGCAATGGTGTAGCCCTTGGAAATAACAATCATAATGCTGATCAGGAACATGCCCAGGCATTGTGA 2613 0.4401 MASVTSSSSSSNLCYNPQCKQFKSQFSREGWKLRSGDQAQLCDRCSSAFEEGRFCETFHLNASGWRNCEICRKGIHCGCIVSANSFRLLDPGGIECIGCAREHLLLSSIQPLPKSFSFQNRLLSERLGDLSAKGWNQLGGSGPVQPWKQVPSPFNSISSPNLHPDVSSIVDLSHNFDKMYGNEKLPFTSMEKKNKDLSGTSSWSATLGSREMMLMNGMRNEDKSSSCLNICQQLPSLKEDSALRPFGLSVPYASPNERNSQVGATKSHPQQSPPSCPGKQFSGTSHLPLDTSGETQAHNGWPHVDTLGRNQLFPQYWPRCTELELQQLSIDSNSIITPLFQKTLSASDAGRNGRLVLPKNCAEAYFPPISQPEGLPLKILDTKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFNRLEPEGRLVMGFRKSSSATPSDQDSRTYKNGNGFSAHGDAELAKEALGSKSSISRKRKSSILGSKSKHLLHLNITLQEAQGLLRPPPNHVASIVVIEGFEFEEYEDAPVLGKPTIFTTGNDGENIRWAQCEYCLKWRKLPASALLPSKWTCPDNSWDPERSSCSSAQELTAEELENLLSCKSAVSKKKKATKKDLDNIEASEGLDTLSNLAILGEDETLPAYEQAIKKHPRHKPGCSCIVCIQPPNGKVPQHKQTCTCNVCLTVQCSFRTLMLRRETKQSEREAETIQNNQQKQQPQALPSSVILIDDNSLPYSNNMGVSSPNENREGTDGNPNQNREGGDGSNDDPDQIKPTALPFKGQIDLNIQPAREEELSPCSDFGGMMKALHGATERYLRQQSMLNSGCADSSSSQSQRVGDGMSEVKHSNGVALGNNNHNADQEHAQAL* 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0590 870 MobiDBLite consensus disorder prediction 825 844 - -
Lan18g0590 870 CDD B3_DNA 338 439 IPR003340 GO:0003677
Lan18g0590 870 Pfam CW-type Zinc Finger 552 593 IPR011124 GO:0008270
Lan18g0590 870 ProSiteProfiles B3 DNA-binding domain profile. 340 441 IPR003340 GO:0003677
Lan18g0590 870 MobiDBLite consensus disorder prediction 438 459 - -
Lan18g0590 870 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 9 457 - -
Lan18g0590 870 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 466 805 - -
Lan18g0590 870 MobiDBLite consensus disorder prediction 702 779 - -
Lan18g0590 870 Pfam B3 DNA binding domain 340 439 IPR003340 GO:0003677
Lan18g0590 870 Gene3D - 550 604 - -
Lan18g0590 870 MobiDBLite consensus disorder prediction 709 765 - -
Lan18g0590 870 MobiDBLite consensus disorder prediction 248 302 - -
Lan18g0590 870 MobiDBLite consensus disorder prediction 851 870 - -
Lan18g0590 870 SUPERFAMILY DNA-binding pseudobarrel domain 337 441 IPR015300 -
Lan18g0590 870 MobiDBLite consensus disorder prediction 439 457 - -
Lan18g0590 870 SMART B3_2 340 440 IPR003340 GO:0003677
Lan18g0590 870 MobiDBLite consensus disorder prediction 825 870 - -
Lan18g0590 870 ProSiteProfiles Zinc finger CW-type profile. 546 596 IPR011124 GO:0008270
Lan18g0590 870 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300-LIKE ISOFORM X1 466 805 - -
Lan18g0590 870 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300-LIKE ISOFORM X1 9 457 - -
Lan18g0590 870 Gene3D - 318 444 IPR015300 -
Lan18g0590 870 MobiDBLite consensus disorder prediction 253 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0590 Lan-Chr18 10828916 10843917 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0590 10 703 B3 DNA Binding Superfamily AT4G32010 41.460 2.03e-154 470
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lan18g0590 B3 2.9e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0590 - - gmx:100807252 1224.92