Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0582 ATGGCGGAGGGTGAGAATTTTGATTTTCCGGAACTGTTTCCTGTTGTTGATGTCGATGACGATGATGATAAAACGTGTATTGATCTTCAGATGATTATGAAGATCCTTGATGAGGATCCTGGCTCTGTTGAAGAGTGTAGTCCTGTGGATTCTTCATTAAAAAATGTTTCACCTGGTGAATCTGGCACCAATAGTGCTTTTCAGCTTCAAAATGGGCCTCAAGTGTTAGAAGAACCAATATTTTCTGGGTTTGATTTTGTGGATTCAGACATGGGCAATTCTCCAGTCTTCTCAGTTGTGTCTGATTCTGGGGCCAGAGTTTCAGTTGGCTTATCTGTTTCTGCAGCAAATTCTGTGGTTTACCATAAACATGAAAACCAGGAACCTCCATCTCAGGATTCCTCTTCCCCAAGTGCTTTCTCTGGTAGTTACAGGGACTCATTATCTCTGGGTGGAAGCGATGATATTTCCTACACTGGAAGGATGGGAGGTTCTAAAAGTGAGATACCTGCCTACAGTGTTGAAACAAGTTTCCCTGAGGCTTATTCAAACAATATATCAGTTCATGGAGATGATTTGCATCAGAGTACATGGAAGGGTGAAAACAAGAGCCAATTTATTCACATGGGAGAGGATGCTCCATCTGAAAATGCTTCACACAGTTCTATCATTGACAACGGTGATGTAAATTTTGAAGACTTTGTCAAAGACACAATTGGAGGAGTTTCTGGGCATCAGGAAAATGAATCGTGTACATCTTTTGAAATATCAGTCATGGATGCTAATACACCTTTGCATGTTGCAACTTCTACCGATTCTGCTTTTTGTCAAGGCTCCCATGTTCCAAGTGATGCTAGTGACTACTATCTATCTTCTAAATGCTACCAGGGAACAGGTGGTAGTCCTTTTGTTGCTGACTCATCTCTTGCTTTTTTGCCTGGTGGTATTTCTTCTCAGCTATGGACAAATGATGGAACCATGAGTAACACGAAGGCGGAAAATGTGGAGTTCTATGGTGATATGTCACACGTGAGTAGTGGCATGTACTCGAGCAGTACTGAGGGGGCATCTTTTCAAGATAGTCAATTAATGTTAACAGATAGTGGGTTTCCATCATTTTTTTCTGATAATGTTATCTTTGAAGACAAGGCATCTGTGCCACTTTCAGCTTGTGCTTCATACATGTCATATGGAGACCAATCACTTTGTTTAAAAGATGAAAGAAATGAACTGAGTACACTTTACCAAAATAGTTTGCAAAATGGTGATGCCAAGTTCAATGTAGGTCAAGACATGAAACAGTTATGTGGTGCTTTTCCTTCTATGGAGTATCAGCGTTATGAATTTAAGCCTGAGGATAATCATACAGTCACATCTTCTCTAGCCAATCATAAGCAAGATGTGTTTAATGGTACTGTTCGTAAATTTCAAGGAAATATGGGCGATATGAATTTAAAAGCTGTGGACAAACCTTTGCCCTATGCCCAAGCATCAATTGTCAGTGAGAAGCAGTTTGGTTGTGTTAAGAGAGAAGGAGGAGGCAGAACGATTCAACTTAAACATATCAGTTCTCATCTTTCAAAAGGTAGTGCTGAAATTATCCGTGTTGAGGATGACTCTGATGTTTGCATTATTGAAGACATCAGTCACCCTGTGCCTACTAGGCAATATGCAGACATTGGGAATTCCCTTGGTATATCCCATTCTTCTAGTTATGTTGATTCCCGACCTTCCATGGCTGGAAGCACAAGAGTGAAGGCATGTGATGAGCGAAATATATTACGAGTTGCACTGCAGGATCTATCTCAGCCAAAGTCTGAAGTTAGCCCACCAGATGGATTGTTGGCAGTTCCTCTTTTAAGACATCAGAGAATTGCTTTATCATGGATGATTAAGAAGGAAACATCAAGCTTATATTGCTCAGGAGGAATTCTTGCAGATGATCAGGGACTTGGAAAAACTGTGTCCACTATTTCCTTAATATTAACGGAAAAACCACCAACACATAGTGTGTGCACCAATGCCCCAAAAGGTGAATTAGAAACTTTGAATCTGGATGTGGATGATGACATGCTTTCTCTTAATGATGGAGTGATGAAAGAATGTAGATATCCAGTCAAGAGTACGGATTTGTTGATGCAAGCAAAAGGAAGACCATCTGGTGGAACCCTTGTTGTTTGTCCCACCAGCGTCCTACGCCAATGGGCTGAGGAGTTGCGTAATAAGGTAACCAGCCAAGCAAATCTCTCCGTGCTTGTGTTCCATGGAAGCAATCGAACAAAAGATCCTTATGAGGTGGCCAAGTATGATGTTGTTGTGACAACTTACTCCATTGTCGGCATGGAGGTCCCAAAGCAGCCTCTAGTTGACAAAGATGAAGAAAAGGGTGGTTTTGAAGATCTTGCTGTACCGAGTAGGAAACGGAAGGAGCCTTCTAATTCTAATAGAAATGGCAAGAAGGGAATGAGCAACACAGTGCTCGAGGCTGTGGCACGCCCTCTTGCAAAGGTGGCATGGTTTAGGGTTGTCCTGGATGAGGCACAGAGTATAAAGAATTACAAAACTCAAGTTGCAAGGGCCTGCTGGGGTCTTCGTGCTAAGCGTAGATGGTGCTTGTCAGGGACTCCCATCCAGAATTCAATTGATGATCTATACAGTTATTTTAGATTTCTGAGATATGACCCTTATGCAGTCCATTCATCATTCTGCTTTATGATTAAGAACCCAATTAACAGGAATCCAACAAAAGGGTATAGAAAGCTACAAGCTGTATTGAAGACAATAATGTTACGTCGGACCAAAGGCACACTTCTTGATGGGGAACCTATTATTTCATTGCCTCCTAAATCTGTAGAGCTGAAAAAGGTTGATTTTTCACGGGAGGAACGCGATTTCTATTCCAGACTAGAGGCTGATTCACGTGCACAGTTTCAGGAATATGCTAATGCTGGAACTGTCAAGCAAAACTATGTCAATATTTTGCTTATGCTTCTGCGCCTTAGACAAGCTTGTGATCACCCTCTGCTTGTCAATCATTACAATTCTGACCCTCTATGGAGATCTTCGGTTGAGATGGCAAAGAAGATTCCTCAGGAAAAACAAATATCACTTCTGAATTGTTTAGAGGCTTCATTGGCCCTCTGTGGCATCTGTAATGATCCTCCTGAAGATGCTGTTGTTTCTGTCTGTGGCCACGTTTTCTGCAACCAGTGCATTTCTGAACATCTTACTGGTGATGACAATCAGTGTCCTGCTACAAATTGCAGAACTGGACTAAGCACGTCTAAGGTGTTTTCAAAAGATACATTGAAAAGTTGTCTTTCTGAGAAGGGTTGTGATAATTTGCCTGGTTGCTCCGGTTCCAAAGTAGAGGAATCTGAGCCATGGTTTCAGAGTCAGCCATATGATTCTTCGAAAATTAAGGCTGCACTTGAGGTGTTGCAGTCATTGTGTAAGGCACAACGCTACACACCAAAAAGTATTTCCGCACATAGCACTACTGGGGAAAATATTGACTGCTCTGTGAACTCTTGTGATTCTAACATAGGGAGATCCTTCAAGAACTTTCCTGAGAATCATAATTTGTCTTTGGATAGAAGCTCTAAGGAATCAACCACTGTTCTAGGGGAGAAAGCAATAGTGTTTTCTCAGTGGACTAGGATGCTAGATTTGCTTGAAGAGTGTCTTAAGAAATTTTCAATTCAGTATAGAAGGCTTGATGGAACAATGTCCGTTGTTGCCAGAGATAAGGCTGTTAAAGATTTTAACACTCTCCCTGAGGTATCAGTTATGATTATGTCTTTGAAGGCTGCCAGTCTTGGTCTAAACATGGTGGCAGCCTGCCATGTTCTTATGCTAGATTTGTGGTGGAATCCTACAACTGAAGATCAAGCAATAGATAGAGCACATCGCATTGGGCAGACTCGTCCTGTGACTGTTTTGCGGTTAACTGTGAGAGATACGGTTGAAGATCGTATTTTAGCTCTACAGCAAAAAAAGCGAAAGATGGTTGCATCTGCATTTGGGGAAGACGGAACTGGTGGTACTCAAAGTCGCCTTACGGTGGATGATTTGAAATACTTATTCATGATGTGA 4095 0.4159 MAEGENFDFPELFPVVDVDDDDDKTCIDLQMIMKILDEDPGSVEECSPVDSSLKNVSPGESGTNSAFQLQNGPQVLEEPIFSGFDFVDSDMGNSPVFSVVSDSGARVSVGLSVSAANSVVYHKHENQEPPSQDSSSPSAFSGSYRDSLSLGGSDDISYTGRMGGSKSEIPAYSVETSFPEAYSNNISVHGDDLHQSTWKGENKSQFIHMGEDAPSENASHSSIIDNGDVNFEDFVKDTIGGVSGHQENESCTSFEISVMDANTPLHVATSTDSAFCQGSHVPSDASDYYLSSKCYQGTGGSPFVADSSLAFLPGGISSQLWTNDGTMSNTKAENVEFYGDMSHVSSGMYSSSTEGASFQDSQLMLTDSGFPSFFSDNVIFEDKASVPLSACASYMSYGDQSLCLKDERNELSTLYQNSLQNGDAKFNVGQDMKQLCGAFPSMEYQRYEFKPEDNHTVTSSLANHKQDVFNGTVRKFQGNMGDMNLKAVDKPLPYAQASIVSEKQFGCVKREGGGRTIQLKHISSHLSKGSAEIIRVEDDSDVCIIEDISHPVPTRQYADIGNSLGISHSSSYVDSRPSMAGSTRVKACDERNILRVALQDLSQPKSEVSPPDGLLAVPLLRHQRIALSWMIKKETSSLYCSGGILADDQGLGKTVSTISLILTEKPPTHSVCTNAPKGELETLNLDVDDDMLSLNDGVMKECRYPVKSTDLLMQAKGRPSGGTLVVCPTSVLRQWAEELRNKVTSQANLSVLVFHGSNRTKDPYEVAKYDVVVTTYSIVGMEVPKQPLVDKDEEKGGFEDLAVPSRKRKEPSNSNRNGKKGMSNTVLEAVARPLAKVAWFRVVLDEAQSIKNYKTQVARACWGLRAKRRWCLSGTPIQNSIDDLYSYFRFLRYDPYAVHSSFCFMIKNPINRNPTKGYRKLQAVLKTIMLRRTKGTLLDGEPIISLPPKSVELKKVDFSREERDFYSRLEADSRAQFQEYANAGTVKQNYVNILLMLLRLRQACDHPLLVNHYNSDPLWRSSVEMAKKIPQEKQISLLNCLEASLALCGICNDPPEDAVVSVCGHVFCNQCISEHLTGDDNQCPATNCRTGLSTSKVFSKDTLKSCLSEKGCDNLPGCSGSKVEESEPWFQSQPYDSSKIKAALEVLQSLCKAQRYTPKSISAHSTTGENIDCSVNSCDSNIGRSFKNFPENHNLSLDRSSKESTTVLGEKAIVFSQWTRMLDLLEECLKKFSIQYRRLDGTMSVVARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVRDTVEDRILALQQKKRKMVASAFGEDGTGGTQSRLTVDDLKYLFMM* 1365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0582 1364 MobiDBLite consensus disorder prediction 799 822 - -
Lan18g0582 1364 SMART ultradead3 615 913 IPR014001 -
Lan18g0582 1364 CDD DEXDc_SHPRH-like 619 932 - -
Lan18g0582 1364 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 604 932 IPR027417 -
Lan18g0582 1364 Pfam Zinc finger, C3HC4 type (RING finger) 1048 1084 - -
Lan18g0582 1364 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1041 1099 IPR013083 -
Lan18g0582 1364 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 452 1363 - -
Lan18g0582 1364 MobiDBLite consensus disorder prediction 799 815 - -
Lan18g0582 1364 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 634 894 IPR014001 -
Lan18g0582 1364 CDD SF2_C_SNF 1209 1316 - -
Lan18g0582 1364 SUPERFAMILY RING/U-box 1045 1097 - -
Lan18g0582 1364 Gene3D - 947 1363 IPR027417 -
Lan18g0582 1364 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1200 1359 IPR001650 -
Lan18g0582 1364 Pfam Helicase conserved C-terminal domain 1207 1306 IPR001650 -
Lan18g0582 1364 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 940 1363 IPR027417 -
Lan18g0582 1364 Pfam SNF2-related domain 639 1009 IPR000330 GO:0005524|GO:0140658
Lan18g0582 1364 Gene3D - 593 683 IPR038718 -
Lan18g0582 1364 SMART helicmild6 1223 1306 IPR001650 -
Lan18g0582 1364 MobiDBLite consensus disorder prediction 124 144 - -
Lan18g0582 1364 ProSitePatterns Zinc finger RING-type signature. 1063 1072 IPR017907 -
Lan18g0582 1364 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 452 1363 - -
Lan18g0582 1364 ProSiteProfiles Zinc finger RING-type profile. 1048 1087 IPR001841 -
Lan18g0582 1364 SMART ring_2 1048 1086 IPR001841 -
Lan18g0582 1364 Gene3D - 809 933 IPR038718 -
Lan18g0582 1364 Gene3D - 706 793 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0582 Lan-Chr18 10726266 10738734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0582 488 1363 RAD5 or RAD16-like Gene Family AT1G61140 59.513 0.0 961
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lan18g0582 SNF2_N 8.4e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0582 - - lang:109332935 2646.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g0582 18 10726266 10738734 Lan6g0710 6 6293802 6303576 LSH
Lan18g0582 18 10726266 10738734 Lan4g0696 4 9378372 9388830 PCT
Lan4g0696 4 9378372 9388830 Lan18g0582 18 10726266 10738734 PCT