Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0576 ATGTATGTTACTTCCATGCGAAAATCTTTCAAGGATTCATTGAAACACCTTGAAGCTGATATCCAACACGCTAATACCTTGGCGTCAGATTATCCAAGGGAGTATGATGGTGCATGCCTTCAGATGAGAATGTCATACAGTCCTGCTGCACACTTGTTTCTTTTTTTGGTGCAATGGACTGATTGTCATCTAGCAGGAGCTCTTGGACTGCTAAGAATCTTAATTTACAAGGTGTACGTGGATGGGACAACAACCATGTCTATTCAAGAAAGAAGAGCAAGTATTAGAGAATTCTATGCGGTCATTTATCCTTCTTTGATGCAACTTCAAAAGGGCGTTACTGATACAGAGGACAAAAAGCAAAAGGCTGTATGCATGGAGAAGTATCATAGAAGAGATGATGAGGACTATAGGCAATGCTCTGACATAGACATCGAAAGAGAAGATGAATGTGGAATATGCATGGAGACGAATAGTAAGATTGTGTTGCCCAACTGCAATCATGCCATGTGCCTGAAATGTTACCGAGAGTGGCGAACAAGATCACAGTCATGTCCATTTTGCCGTGACAGTCTCAAGAGAGTGAATTCGGGTGATCTCTGGGTATTTACTGATAAGAAGGATATAGTAGATATGGCAACAGTGACAAAGGAGAATCTTAGAAGACTTTTCATGTACATAGATAAGCTACCTTTGACTGTTCCAGACTCCCTTTTTTACACTTATGACTCCCACCTGAGATAA 744 0.4073 MYVTSMRKSFKDSLKHLEADIQHANTLASDYPREYDGACLQMRMSYSPAAHLFLFLVQWTDCHLAGALGLLRILIYKVYVDGTTTMSIQERRASIREFYAVIYPSLMQLQKGVTDTEDKKQKAVCMEKYHRRDDEDYRQCSDIDIEREDECGICMETNSKIVLPNCNHAMCLKCYREWRTRSQSCPFCRDSLKRVNSGDLWVFTDKKDIVDMATVTKENLRRLFMYIDKLPLTVPDSLFYTYDSHLR* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0576 247 Pfam Zinc finger, C3HC4 type (RING finger) 148 194 - -
Lan18g0576 247 SUPERFAMILY RING/U-box 139 193 - -
Lan18g0576 247 PANTHER PEROXISOME BIOGENESIS FACTOR 10-LIKE 3 247 - -
Lan18g0576 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 198 IPR013083 -
Lan18g0576 247 ProSitePatterns Zinc finger RING-type signature. 166 175 IPR017907 -
Lan18g0576 247 PANTHER RING FINGER PROTEIN 41, 151 3 247 - -
Lan18g0576 247 SMART ring_2 151 188 IPR001841 -
Lan18g0576 247 ProSiteProfiles Zinc finger RING-type profile. 151 189 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0576 Lan-Chr18 10639052 10642861 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0576 99 205 C3H Transcription Factor Family AT5G01960 29.464 2.99e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0576 K25840 - gmx:100777318 465.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0702 17 6254012 6258711 Lan18g0576 18 10639052 10642861 LSH
Lan18g0576 18 10639052 10642861 Lan6g0722 6 6583514 6587836 LSH
Lan18g0576 18 10639052 10642861 Lan4g0689 4 9349091 9352438 PCT
Lan4g0689 4 9349091 9352438 Lan18g0576 18 10639052 10642861 PCT