Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0561 ATGGAGAAACAGTCGAACGAAACTCTAGAGGAAGAAGTGCTTACTAGCGATGGAAACAAGTCAAACAACCATGACCTTCCAGAAGATGAAGCTGAATCTGATCGAAGCCACTCTTTGTCTTTGAGCGATGAGGACAATGAAATATATGTGTCTCTAGACTGGTCAGATGTTCGCGAGGTTGTTGAGTGCCCTATCTGCCTAGACACTATTCAGAAAACCAAAGCCATAAAGGAATGTCTGCATCGCTTTTGCGGAGAATGCATAGAGAAATCTATGCGTCTTTGTAACAGTGAATGTCCAATTTGTCGCACACATTATGCTGGCCAATCCTCTTTGAAAGACGACGTTAACTATGATGCCCTGATTTCTTTTGTATCTACTCGTATTGGCAAGTATGAGGAGGAGGAATTGTCCTTACATGAAGATGAGAAGAAAGACAATAAGCTGTGA 450 0.42 MEKQSNETLEEEVLTSDGNKSNNHDLPEDEAESDRSHSLSLSDEDNEIYVSLDWSDVREVVECPICLDTIQKTKAIKECLHRFCGECIEKSMRLCNSECPICRTHYAGQSSLKDDVNYDALISFVSTRIGKYEEEELSLHEDEKKDNKL* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0561 149 MobiDBLite consensus disorder prediction 1 40 - -
Lan18g0561 149 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 125 IPR013083 -
Lan18g0561 149 ProSiteProfiles Zinc finger RING-type profile. 63 103 IPR001841 -
Lan18g0561 149 PANTHER OS11G0578200 PROTEIN 6 148 IPR044592 -
Lan18g0561 149 SMART ring_2 63 102 IPR001841 -
Lan18g0561 149 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1A-RELATED 6 148 - -
Lan18g0561 149 SUPERFAMILY RING/U-box 62 109 - -
Lan18g0561 149 CDD RING-HC_RING1_like 63 103 - -
Lan18g0561 149 Pfam Zinc finger, C3HC4 type (RING finger) 62 102 - -
Lan18g0561 149 ProSitePatterns Zinc finger RING-type signature. 79 88 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0561 Lan-Chr18 10474556 10482265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0561 62 109 RAD5 or RAD16-like Gene Family AT5G22750 40.816 9.56e-06 42.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0561 K10695 - lang:109338546 164.851