Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0526 ATGGACAACACCAAGAAGCGCAAAACTGAAGACAACGGCGACGGCACCGTCGCTGAATCTCCGCCAAAATCACCATCTACCATCGCCACCGCAGCCCTTACCTCCGATGACATCCGCAAGATCCTCCAACCTTTTACACAAGACCAGCTTCTCGACCTCCTCCAATCTGCCTCCCTCCGCCACCCCGACGTCCTCGACTCCGTCCGCACCCTTGCCGACCGCGACCCCGCCCTCCGCAAACTCTTCGTCCGCGGCCTCTCCGGAGAAACCACCACCGACAACCTCCGCACCGTGTTCTCCGCCTTCGGCGAACTCGACGAGGCCATCGTCATCATGGACAAGACCACCGGAAAGTCCAAGGGCTATGGCTTCGTCACGTTCAAGCACGTTGACGGCGCCATCATTGCACTGAAGGAGCCTAGCAAGAGAATTGACGGGAGGATGACGGTTACGCAGCTTGCGGCTGCTTCGGCGAGTTCGACCACGACGGATGTTTCTGCTAGGAAAGTGTTTGTGGGGAATGTTCCGTTTGATATATCGCCGGAGAGATTGTTAGAGCACTTTCTTGCGTATGGGGAAATTGAAGAAGGGCCTTTAGGGTTTGATAAAGCGAGTGGGAAGACAAGAGGGTTTGCTTTCTTTGTTTACAAAACGGAAGAAGGTGCTAGAGCTTCGCTGTCTGAGACCGCCAAAACCATTGATGGCCATCAGGTGATTTGCAAATTAGCTGTGGATAACAAGAAGGCAAAACCTGGAGGAATTCCAGGCCAGACACCGCCTTCAGGGTTTGCCGGGAATGGTATGACTTTTCAGCAGCAGCAACAGCAACAGCTGCAACCTTCTATGCATGCTCCTATGCTGGGATCACAATATGGTGGGAATGCTAACAATTATGGGGTGCAGTCTTCAGCACCTTCATATGGTAATCCTGTACCGGCTAGCGGTGCTGGGTACGGGCATGGAGTTGGCAGTGCTTATGGTAATCTGCAATTTAGTGGGCCGGTTTCTGGTGACTATGGCACACGGTTCCCTCCCAATTCTGCTGGAGCGCCTTCTGGGGGATTTCCAGGTGGGGTACATTATGGTCTGCCTCCAAATTCACAGCATCCACAGCCCATGCCAATGCAAAGACCTCCTCAAGGAGGAATGTACCAAGGCGTGCCGCCTTATTATTGA 1176 0.5366 MDNTKKRKTEDNGDGTVAESPPKSPSTIATAALTSDDIRKILQPFTQDQLLDLLQSASLRHPDVLDSVRTLADRDPALRKLFVRGLSGETTTDNLRTVFSAFGELDEAIVIMDKTTGKSKGYGFVTFKHVDGAIIALKEPSKRIDGRMTVTQLAAASASSTTTDVSARKVFVGNVPFDISPERLLEHFLAYGEIEEGPLGFDKASGKTRGFAFFVYKTEEGARASLSETAKTIDGHQVICKLAVDNKKAKPGGIPGQTPPSGFAGNGMTFQQQQQQQLQPSMHAPMLGSQYGGNANNYGVQSSAPSYGNPVPASGAGYGHGVGSAYGNLQFSGPVSGDYGTRFPPNSAGAPSGGFPGGVHYGLPPNSQHPQPMPMQRPPQGGMYQGVPPYY* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0526 391 SUPERFAMILY RNA-binding domain, RBD 71 153 IPR035979 GO:0003676
Lan18g0526 391 CDD RRM_RBM24_RBM38_like 79 153 - -
Lan18g0526 391 SMART rrm1_1 169 241 IPR000504 GO:0003723
Lan18g0526 391 SMART rrm1_1 80 152 IPR000504 GO:0003723
Lan18g0526 391 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 79 156 IPR000504 GO:0003723
Lan18g0526 391 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 360 - -
Lan18g0526 391 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 170 237 IPR000504 GO:0003723
Lan18g0526 391 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 81 147 IPR000504 GO:0003723
Lan18g0526 391 PANTHER GEO13361P1-RELATED 1 360 - -
Lan18g0526 391 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 168 250 IPR000504 GO:0003723
Lan18g0526 391 MobiDBLite consensus disorder prediction 337 391 - -
Lan18g0526 391 MobiDBLite consensus disorder prediction 1 27 - -
Lan18g0526 391 Gene3D - 67 160 IPR012677 -
Lan18g0526 391 Gene3D - 161 279 IPR012677 -
Lan18g0526 391 SUPERFAMILY RNA-binding domain, RBD 161 262 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0526 Lan-Chr18 10049957 10054824 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0526 151 252 C2H2 Transcription Factor Family AT2G19380 35.294 1.83e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0526 K12741 - gmx:100816590 425.246