Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lan18g0526 | ATGGACAACACCAAGAAGCGCAAAACTGAAGACAACGGCGACGGCACCGTCGCTGAATCTCCGCCAAAATCACCATCTACCATCGCCACCGCAGCCCTTACCTCCGATGACATCCGCAAGATCCTCCAACCTTTTACACAAGACCAGCTTCTCGACCTCCTCCAATCTGCCTCCCTCCGCCACCCCGACGTCCTCGACTCCGTCCGCACCCTTGCCGACCGCGACCCCGCCCTCCGCAAACTCTTCGTCCGCGGCCTCTCCGGAGAAACCACCACCGACAACCTCCGCACCGTGTTCTCCGCCTTCGGCGAACTCGACGAGGCCATCGTCATCATGGACAAGACCACCGGAAAGTCCAAGGGCTATGGCTTCGTCACGTTCAAGCACGTTGACGGCGCCATCATTGCACTGAAGGAGCCTAGCAAGAGAATTGACGGGAGGATGACGGTTACGCAGCTTGCGGCTGCTTCGGCGAGTTCGACCACGACGGATGTTTCTGCTAGGAAAGTGTTTGTGGGGAATGTTCCGTTTGATATATCGCCGGAGAGATTGTTAGAGCACTTTCTTGCGTATGGGGAAATTGAAGAAGGGCCTTTAGGGTTTGATAAAGCGAGTGGGAAGACAAGAGGGTTTGCTTTCTTTGTTTACAAAACGGAAGAAGGTGCTAGAGCTTCGCTGTCTGAGACCGCCAAAACCATTGATGGCCATCAGGTGATTTGCAAATTAGCTGTGGATAACAAGAAGGCAAAACCTGGAGGAATTCCAGGCCAGACACCGCCTTCAGGGTTTGCCGGGAATGGTATGACTTTTCAGCAGCAGCAACAGCAACAGCTGCAACCTTCTATGCATGCTCCTATGCTGGGATCACAATATGGTGGGAATGCTAACAATTATGGGGTGCAGTCTTCAGCACCTTCATATGGTAATCCTGTACCGGCTAGCGGTGCTGGGTACGGGCATGGAGTTGGCAGTGCTTATGGTAATCTGCAATTTAGTGGGCCGGTTTCTGGTGACTATGGCACACGGTTCCCTCCCAATTCTGCTGGAGCGCCTTCTGGGGGATTTCCAGGTGGGGTACATTATGGTCTGCCTCCAAATTCACAGCATCCACAGCCCATGCCAATGCAAAGACCTCCTCAAGGAGGAATGTACCAAGGCGTGCCGCCTTATTATTGA | 1176 | 0.5366 | MDNTKKRKTEDNGDGTVAESPPKSPSTIATAALTSDDIRKILQPFTQDQLLDLLQSASLRHPDVLDSVRTLADRDPALRKLFVRGLSGETTTDNLRTVFSAFGELDEAIVIMDKTTGKSKGYGFVTFKHVDGAIIALKEPSKRIDGRMTVTQLAAASASSTTTDVSARKVFVGNVPFDISPERLLEHFLAYGEIEEGPLGFDKASGKTRGFAFFVYKTEEGARASLSETAKTIDGHQVICKLAVDNKKAKPGGIPGQTPPSGFAGNGMTFQQQQQQQLQPSMHAPMLGSQYGGNANNYGVQSSAPSYGNPVPASGAGYGHGVGSAYGNLQFSGPVSGDYGTRFPPNSAGAPSGGFPGGVHYGLPPNSQHPQPMPMQRPPQGGMYQGVPPYY* | 392 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lan18g0526 | 391 | SUPERFAMILY | RNA-binding domain, RBD | 71 | 153 | IPR035979 | GO:0003676 | |
Lan18g0526 | 391 | CDD | RRM_RBM24_RBM38_like | 79 | 153 | - | - | |
Lan18g0526 | 391 | SMART | rrm1_1 | 169 | 241 | IPR000504 | GO:0003723 | |
Lan18g0526 | 391 | SMART | rrm1_1 | 80 | 152 | IPR000504 | GO:0003723 | |
Lan18g0526 | 391 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 79 | 156 | IPR000504 | GO:0003723 | |
Lan18g0526 | 391 | PANTHER | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN | 1 | 360 | - | - | |
Lan18g0526 | 391 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 170 | 237 | IPR000504 | GO:0003723 | |
Lan18g0526 | 391 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 81 | 147 | IPR000504 | GO:0003723 | |
Lan18g0526 | 391 | PANTHER | GEO13361P1-RELATED | 1 | 360 | - | - | |
Lan18g0526 | 391 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 168 | 250 | IPR000504 | GO:0003723 | |
Lan18g0526 | 391 | MobiDBLite | consensus disorder prediction | 337 | 391 | - | - | |
Lan18g0526 | 391 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Lan18g0526 | 391 | Gene3D | - | 67 | 160 | IPR012677 | - | |
Lan18g0526 | 391 | Gene3D | - | 161 | 279 | IPR012677 | - | |
Lan18g0526 | 391 | SUPERFAMILY | RNA-binding domain, RBD | 161 | 262 | IPR035979 | GO:0003676 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lan18g0526 | Lan-Chr18 | 10049957 | 10054824 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lan18g0526 | 151 | 252 | C2H2 Transcription Factor Family | AT2G19380 | 35.294 | 1.83e-13 | 70.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lan18g0526 | K12741 | - | gmx:100816590 | 425.246 |