Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0525 ATGCTTTACTCGATATTATATAACTCAAACTCTTCGCCCCGAGATGGGTTGGCATCAACTCATTCATTACCTTTTGAGAGTGAGAAAGGAGAGTTAGTGAAGTGCCCTACAAGGATAGGGCTTAAGAATGAGATATCTGAGGCCAAAACTTTGGCAGCTTTGAAGAACCATAGTGAAGCAGAAAGGAGGAGGAGGGAAAGAATAAATGGTCATTTTGATACACTGCGTGGTTTAGTGCCCTCTAATGAAAAGCTGGATAAAGCCACATTACTAGCTGAAGTTATTAGCCAAGTGAAGGAATTGCACAAGAATGCAATGGAATCAAGCAAAGGCCTTATAATCCCAAAATATTATGATGAAGTGAAAATTGAACCATATAATGATGCAGGAGAAGGATATGGATCAATATGTTACAAGGCATCTATCTGTTGTGGTTACACACCTGAGATATTATCTGACCTTAAACAAACACTTGATGCCCTTAAACTGAAACTTGTAAGGGCAGAAATATCAACTTTGGGAAAGAGGGTGAAGAATGTTTTTGTCTTTATATGTTGCAAAGGGGACAATAGTGATGTTGATGCATGCAAAGCTCTTGAAAGTTTTGTTTACCAGGCTCTAAGTTCTGTATTAGATAAGGCTTCTAGCACATTGGAGTACTTACCAAGAACATCACATCCAAATAAAAGGGGAAGATTTTGCTCTAGTGAAAATTCTGCTTCCCCATGCAACCATGAATCTTGTTCATGCTGA 753 0.3865 MLYSILYNSNSSPRDGLASTHSLPFESEKGELVKCPTRIGLKNEISEAKTLAALKNHSEAERRRRERINGHFDTLRGLVPSNEKLDKATLLAEVISQVKELHKNAMESSKGLIIPKYYDEVKIEPYNDAGEGYGSICYKASICCGYTPEILSDLKQTLDALKLKLVRAEISTLGKRVKNVFVFICCKGDNSDVDACKALESFVYQALSSVLDKASSTLEYLPRTSHPNKRGRFCSSENSASPCNHESCSC* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0525 250 SMART finulus 58 107 IPR011598 GO:0046983
Lan18g0525 250 PANTHER TRANSCRIPTION FACTOR BHLH30 17 242 IPR045847 GO:0003700|GO:0006355
Lan18g0525 250 Pfam Helix-loop-helix DNA-binding domain 56 101 IPR011598 GO:0046983
Lan18g0525 250 CDD ACT_UUR-ACR-like 141 207 - -
Lan18g0525 250 Gene3D - 47 110 IPR036638 GO:0046983
Lan18g0525 250 Coils Coil 151 171 - -
Lan18g0525 250 PANTHER DNA BINDING PROTEIN-LIKE 17 242 - -
Lan18g0525 250 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 56 104 IPR036638 GO:0046983
Lan18g0525 250 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 52 101 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0525 Lan-Chr18 10038467 10042516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0525 45 183 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 42.553 2.90e-30 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan18g0525 HLH 9.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0525 - - gmx:100804756 313.538