Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0512 ATGTTTATTTCCCTTGAAGATTTGAGAAGGAAAAAGAAGAGAGATTTATGGAGTGAAGATGGTTATGGTTTAAGAGAAAACCCAAAGAAAACAATGAGGTCTGTGAATTCCAATGGCACTTTGGAACAACAACAAGAGGAGGTGGTGGTGGAGAAGTTCTGCAAAGAATGTGGAAAAGGGTTTTCATCATTGAAAGCACTTTGTGGTCACATGGCTTGTCATTCTCAGAAGCAGAAGAAATTGGTTTTGGATAGTGAATCTGATACTGAGGAGATTTGTGATGTTTCAAAGAATCCAAGGAGATCCAAGAGAATGAGGTTCAAGGCCATTAGCCTTGGAAATAATCAGAGTTATTCTTCTTCTGTTCCTTTGGTAAATGGTTCTTCTTCTGTGTCAGAGGTGGAACAGGAGCAAGAAGAGGTTGCAAGGTGTTTGATGTTGTTGTCCAAAGATTGTAGCCATAAGGGTCCTTTTGCATTGGTTAATGAGTCTTCTGAGAACAACTCAGTTGTTGTTGAGGCAGAAAAATCATCACATGTTGATATGAGGTTTTGTATAAAAAATGGTAACAAGTTTGTCTCTAATGGTTATGAAACTTATGATCCTGTGGAGAACAAGGTGCTGAAGTTAAAGTCTACTGATAACTCAGATTCTGGCTATTACAGATATGGTCCTCAAGCCAAACTGGCAAAATCAGATGTTGCAAATGACGAATTTAAGTCCAAGTTTGAAAATTACAATGTCGAGTCGAGGAAGATGCTGAACATGAATAAAGGGGTTAGCAAATACACTGTAACTTCATTTAAGAAATCAGTGAAGGAGGATTTGAATTATGACAGAACGAATGGTACTACAAGGAAGTTTGATTCTAAAAACATAGCCAATTATGATTCTTTTGACCATAGCAAGAAGGACACAGAATATAGTTTTGGCAATGATGAAATCTATGAGACTGATGAAAAAGGATGGAAGTATGAAAGTTTGGCTTATGATTCAACAGATGAGAGTGATGAAAGCAGCTCAGACACTGATTCTTTACCTATTCCAAAGTCTCATAGTAAGAATGTTTTCAATGGAAAGAACACTAGCAAGGCTAAGAAGAAGTTAAAGTCAAAGAAAAGCAAGGAATTTGAGTGTCCAATCTGCTACAAAATTTTCAAGTCAGGCCAAGCCTTAGGAGGTCACAAAAGATCTCATTTTGTTGGAGGTTCTGAAGAAAGTTCTATGGTCATAAACCAAGGTCTTTGCTTTATTGATCTCAATCTACCAGCTCCTGTTGATGAATAG 1287 0.373 MFISLEDLRRKKKRDLWSEDGYGLRENPKKTMRSVNSNGTLEQQQEEVVVEKFCKECGKGFSSLKALCGHMACHSQKQKKLVLDSESDTEEICDVSKNPRRSKRMRFKAISLGNNQSYSSSVPLVNGSSSVSEVEQEQEEVARCLMLLSKDCSHKGPFALVNESSENNSVVVEAEKSSHVDMRFCIKNGNKFVSNGYETYDPVENKVLKLKSTDNSDSGYYRYGPQAKLAKSDVANDEFKSKFENYNVESRKMLNMNKGVSKYTVTSFKKSVKEDLNYDRTNGTTRKFDSKNIANYDSFDHSKKDTEYSFGNDEIYETDEKGWKYESLAYDSTDESDESSSDTDSLPIPKSHSKNVFNGKNTSKAKKKLKSKKSKEFECPICYKIFKSGQALGGHKRSHFVGGSEESSMVINQGLCFIDLNLPAPVDE* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0512 428 ProSiteProfiles Zinc finger C2H2 type domain profile. 52 79 IPR013087 -
Lan18g0512 428 SMART c2h2final6 52 74 IPR013087 -
Lan18g0512 428 SMART c2h2final6 377 399 IPR013087 -
Lan18g0512 428 Pfam C2H2-type zinc finger 377 399 - -
Lan18g0512 428 Pfam C2H2-type zinc finger 54 76 - -
Lan18g0512 428 ProSitePatterns Zinc finger C2H2 type domain signature. 379 399 IPR013087 -
Lan18g0512 428 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 17 428 - -
Lan18g0512 428 SUPERFAMILY beta-beta-alpha zinc fingers 53 399 IPR036236 -
Lan18g0512 428 MobiDBLite consensus disorder prediction 342 360 - -
Lan18g0512 428 ProSitePatterns Zinc finger C2H2 type domain signature. 54 74 IPR013087 -
Lan18g0512 428 MobiDBLite consensus disorder prediction 333 369 - -
Lan18g0512 428 ProSiteProfiles Zinc finger C2H2 type domain profile. 377 399 IPR013087 -
Lan18g0512 428 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 17 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0512 Lan-Chr18 9779305 9781516 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0512 22 428 C2H2 Transcription Factor Family AT1G26610 38.636 1.42e-63 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan18g0512 zf-C2H2_6 1.3e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0512 - - lang:109331689 543.117