Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lan18g0504 | ATGGGGGACAACTTCATTGTATGCATTGATCAGATTATAGCATCTTCCACTCGTTGTTTTGGACCATTTGAAGAAGTGGGTGGAAGAGTGTGTGATGATGGGGTAGGTTCTGTTTCTGACAAAGGTAATGGTGGTGGAGAAGGAGAAGAAGAAGAAGAAGATGGGTGTTCTTCTTCTTCTTCTTCAAACAAGGTTGATGATGATGTTGCTGTTGTTGTGGAAGAGTGCAGAATATGTCAGGAAGAAGATAAAGTTCAAGATATGGAGGCACCTTGTTCATGTAATGGTTCTCTTAAGTTTGCTCATAGGAAGTGTATCCAAAGATGGTGCAATAAGAAAGGAAATATAATCTGCGAAATCTGTAACCAGGCATTTTCACCAAATTATTCTATTCCACCAGTCAGAAGCAATGACATTATGGCAATTGATATAAGGCAAGAATGGGGGCGTAGTTCTGATCTCCATCTAGCACTGACTTCAGCAGAGCACCAGTTGCTACAAACTGAGTATGAGGACTATGCTATTACCCAAATCAGTAGCATTGCATGCCTCCGCTCTGCCACACTCACTTTGGTGATAATTTTGCTCATACGTCAAGCTTTAATGGTAACAGCAAACTCTGCGCGCGGGAAAGATTCATCAAACATCTTTAGCTTTCAGATATCACTCCTTCAATTTGCTGGAATTCTTTTGCCATGCTGTGCAATGGCGCGTTCCTGGTGCGTCATGCAGAATCAAAGGAGAAGACAGTGGTAA | 756 | 0.4193 | MGDNFIVCIDQIIASSTRCFGPFEEVGGRVCDDGVGSVSDKGNGGGEGEEEEEDGCSSSSSSNKVDDDVAVVVEECRICQEEDKVQDMEAPCSCNGSLKFAHRKCIQRWCNKKGNIICEICNQAFSPNYSIPPVRSNDIMAIDIRQEWGRSSDLHLALTSAEHQLLQTEYEDYAITQISSIACLRSATLTLVIILLIRQALMVTANSARGKDSSNIFSFQISLLQFAGILLPCCAMARSWCVMQNQRRRQW* | 252 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lan18g0504 | 251 | SMART | ringv_2 | 75 | 122 | IPR011016 | GO:0008270 | |
| Lan18g0504 | 251 | CDD | RING_CH-C4HC3_MARCH | 76 | 122 | - | - | |
| Lan18g0504 | 251 | Pfam | RING-variant domain | 76 | 121 | IPR011016 | GO:0008270 | |
| Lan18g0504 | 251 | PANTHER | RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING | 1 | 250 | IPR033275 | - | |
| Lan18g0504 | 251 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 55 | 132 | IPR013083 | - | |
| Lan18g0504 | 251 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 68 | 128 | IPR011016 | GO:0008270 | |
| Lan18g0504 | 251 | Pfam | Protein of unknown function (DUF3675) | 127 | 240 | IPR022143 | - | |
| Lan18g0504 | 251 | PANTHER | OS01G0894600 PROTEIN | 1 | 250 | - | - | |
| Lan18g0504 | 251 | MobiDBLite | consensus disorder prediction | 37 | 65 | - | - | |
| Lan18g0504 | 251 | SUPERFAMILY | RING/U-box | 75 | 125 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lan18g0504 | Lan-Chr18 | 9703120 | 9707108 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lan18g0504 | 47 | 121 | C3H Transcription Factor Family | AT2G37950 | 38.750 | 4.46e-07 | 47.4 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lan18g0504 | - | - | lang:109333136 | 409.453 |