Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0490 ATGTCTCAACCAACCAGCAACGGTTCCGATCTGAATCAACAGAATCAACAACAACAACAATGGGTTCAGCAACAACAACAGTCGCATCAGTATCAACAGCAATGGATGGCCATGCAATATCCAGCTACAGCCATGGCCATGATGCAACAACAGATGATGATGTATCCTCAACATTACATGCCTTATCTTCATCATCATCAACAACATCATTATCAGCAACCACCGCCACATCAGCAACAGCACCACATCAAACACCATACGCCGCCGCAGCACCAGCACAAGCAGCAGCAACTCTCCGCCGATGAGATCAAGACGATCTGGCTCGGTGACCTTCACCATTGGATGGATGAGAACTACCTCCATAACTGCTTTGCTCATACTGGAGAGGTTGTATCAGCCAAGGTCATACGAAATAAGCTAACTGGTCAGTCGGAGGGATATGGATTTGTTGAGTTTTATTCGCGAGCAACAGCTGAGAAAGTCTTGCAGAACTATAGTGGCGCGACAATGCCAAATACCGATCAGCCATTTCGTATGAACTGGGCTTCATTCAGTATGGGTGAAAGGAGATCCTCTGATGCTACTTCTGATCTCTCTGTATTTGTGGGGGACTTGGCCATAGAGGTTACTGATGCTATACTGCAAGAGACTTTTGCTACCAGATATTCCTCTATTAAGGGAGCTAAAGTTGTCATTGATGCTAATACTGGTCGTTCAAAAGGTTATGGCTTTGTTAGGTTTGGTGATGAAAATGAGAAGACAAGGGCAATGACTGAAATGAATGGCGTTTATTGTTCAAGTAGGCCTATGAGAGTAGGTGTTGCAACCCCAAAGAAAACTTATGGATATCCTCAACAATATTCTTCACAGTCACAGGCTGTGGTGTTGGCTGGTGGACATCCTTCTAATGGTGCTGTGACTCAAGGTTCCCAATCTGAAGGGGATCTTAACAACACAACTATATTTGTTGGAGGGCTTGATTCTGATATCGGTGATGAGGATCTCAGACAACCATTTTTGCAATTTGGTGAGGTTGTCTCTGTGAAGATTCCAGTGGGTAAAGGGTGTGGTTTTGTTCAATTTGCTGAAAGAAAGAGTGCTGAGGAAGCAATTCAGGCATTGAATGGGACAGTGATTGGGAAGCAGACGGTGCGTCTTTCTTGGGGTCGCAGTCCAGGAAACAAGCATTGGAGGAATGATTCTGATAGAAGCCATTATGGTGGTCAGGGTTATGGAGGCAATGGATATGCTGTGAGACAGAACCAGGATATAGCAATTAATTCTGCTGCTACACTTGAAGGAGATTCCTAA 1311 0.447 MSQPTSNGSDLNQQNQQQQQWVQQQQQSHQYQQQWMAMQYPATAMAMMQQQMMMYPQHYMPYLHHHQQHHYQQPPPHQQQHHIKHHTPPQHQHKQQQLSADEIKTIWLGDLHHWMDENYLHNCFAHTGEVVSAKVIRNKLTGQSEGYGFVEFYSRATAEKVLQNYSGATMPNTDQPFRMNWASFSMGERRSSDATSDLSVFVGDLAIEVTDAILQETFATRYSSIKGAKVVIDANTGRSKGYGFVRFGDENEKTRAMTEMNGVYCSSRPMRVGVATPKKTYGYPQQYSSQSQAVVLAGGHPSNGAVTQGSQSEGDLNNTTIFVGGLDSDIGDEDLRQPFLQFGEVVSVKIPVGKGCGFVQFAERKSAEEAIQALNGTVIGKQTVRLSWGRSPGNKHWRNDSDRSHYGGQGYGGNGYAVRQNQDIAINSAATLEGDS* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0490 436 Gene3D - 301 423 IPR012677 -
Lan18g0490 436 SUPERFAMILY RNA-binding domain, RBD 67 184 IPR035979 GO:0003676
Lan18g0490 436 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 200 269 IPR000504 GO:0003723
Lan18g0490 436 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 173 IPR000504 GO:0003723
Lan18g0490 436 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 321 384 IPR000504 GO:0003723
Lan18g0490 436 CDD RRM3_NGR1_NAM8_like 318 389 - -
Lan18g0490 436 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 22 434 - -
Lan18g0490 436 SUPERFAMILY RNA-binding domain, RBD 198 393 IPR035979 GO:0003676
Lan18g0490 436 SMART rrm1_1 320 387 IPR000504 GO:0003723
Lan18g0490 436 SMART rrm1_1 199 273 IPR000504 GO:0003723
Lan18g0490 436 SMART rrm1_1 105 180 IPR000504 GO:0003723
Lan18g0490 436 CDD RRM1_SECp43_like 105 185 - -
Lan18g0490 436 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47B 22 434 - -
Lan18g0490 436 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 198 277 IPR000504 GO:0003723
Lan18g0490 436 MobiDBLite consensus disorder prediction 393 412 - -
Lan18g0490 436 CDD RRM2_SECp43_like 197 276 - -
Lan18g0490 436 MobiDBLite consensus disorder prediction 1 21 - -
Lan18g0490 436 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 319 391 IPR000504 GO:0003723
Lan18g0490 436 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 104 184 IPR000504 GO:0003723
Lan18g0490 436 MobiDBLite consensus disorder prediction 65 98 - -
Lan18g0490 436 Gene3D - 189 287 IPR012677 -
Lan18g0490 436 Gene3D - 59 188 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0490 Lan-Chr18 9349823 9354544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0490 103 388 Eukaryotic Initiation Factors Gene Family AT2G23350 29.054 6.02e-27 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0490 - - gmx:100798089 599.742