Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0478 ATGTCTCACTCTTCAACACTCCTCACCTACGACCAAGAACTCTCTGTTATCGTCGCCGCTCTCACCAACGTTGTCATCGGTTCCACCTCCAATGTTATTCACTTCCACTCACCGGAAACATCACCGGTTGCCACCGCTACCGTTGGAACCAGCTTTGATCAACGGTTCGAAATGGAAATTTGCCAGGAATGTAACATTGTAGGGTGCTTAGGCTGCAACTTATTCCCAAAGGAGGAGGAGAAACAGAAGAGCGCCGAGAAGAAGTACCGGGGAGTGAGACATAGACCGTGGGGAAAATGGGGTGCGGAGATTCAAGATCCTAGACTTCGTACGCGAGTGTGGCTCGGAACTTTTAACACAGCCGAGGAAGCTGCTAGGGCTTATGACAAAGCAAACATCCAGTTCCGTGGGTCGCAAGCAAAACTTAATTTCCCATTGCCAGAGAAAGAAAGTGTGAATGTGAGGGTTGAAACTGAGGAAGGAGTGAAGGGTGAGAATGTAGATAAGGGAATGGAAGTGGATACATTTGGAAATAAGGAAAGTGAATTTTGGGAGAGTATTGGAGAAGCTGATATTCAGAAGCATATGATGATGGGGAAGGATTTTGCTGGAGATTCTTCTGAATCTGCTGCGAGGAACACTTTCAGTTCTTGA 654 0.4694 MSHSSTLLTYDQELSVIVAALTNVVIGSTSNVIHFHSPETSPVATATVGTSFDQRFEMEICQECNIVGCLGCNLFPKEEEKQKSAEKKYRGVRHRPWGKWGAEIQDPRLRTRVWLGTFNTAEEAARAYDKANIQFRGSQAKLNFPLPEKESVNVRVETEEGVKGENVDKGMEVDTFGNKESEFWESIGEADIQKHMMMGKDFAGDSSESAARNTFSS* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0478 217 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 3 209 - -
Lan18g0478 217 SUPERFAMILY DNA-binding domain 88 146 IPR016177 GO:0003677
Lan18g0478 217 Pfam AP2 domain 88 137 IPR001471 GO:0003700|GO:0006355
Lan18g0478 217 ProSiteProfiles AP2/ERF domain profile. 88 145 IPR001471 GO:0003700|GO:0006355
Lan18g0478 217 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF109 3 209 - -
Lan18g0478 217 SMART rav1_2 88 151 IPR001471 GO:0003700|GO:0006355
Lan18g0478 217 Gene3D AP2/ERF domain 87 146 IPR036955 GO:0003700|GO:0006355
Lan18g0478 217 CDD AP2 87 145 IPR001471 GO:0003700|GO:0006355
Lan18g0478 217 PRINTS Ethylene responsive element binding protein signature 89 100 IPR001471 GO:0003700|GO:0006355
Lan18g0478 217 PRINTS Ethylene responsive element binding protein signature 111 127 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0478 Lan-Chr18 9224007 9224937 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0478 8 146 AP2-EREBP Transcription Factor Family AT4G34410 42.458 3.88e-29 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lan18g0478 AP2 1.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0478 - - lang:109332667 434.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g0802 6 7389538 7390652 Lan18g0478 18 9224007 9224937 LSH
Lan18g0478 18 9224007 9224937 Lan17g0726 17 6697364 6698301 LSH