Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0472 ATGGCTACCCCAAGTAAATCTGCACCAATATTATCTTCCCCCTCCTTGGAACAGAAGGGAAAAAATATGAATGAATCAAATGCAAACATGCTTCAATGTCCTCTAAACCAACAACTCCGTATCTCCTCGGATGGCCCAGTATCTATCCTGTGGGATATTGAAAATTGCTCTATCCCAACCGATGTCCGGCCTGAAGATGTAGCAGGTAATATAAGAATGGCTTTGCAAGTGCACCCAATAATTAAAGGAGCTGTAATGATGTTTTCTGCGTACGGGGATTTCAACGCTTTCCCTAGGCGACTTAGAGAGGGCTGTCAGAGAACTGGTGTTAAACTCATCGATGTTCCGAATGGGAGAAAAGATGCGGCTGACAAAGCTATCTTGGTTGATATGTTTTTATTTGCTCTTGACAACCCTCCGCCGTCCTCTATCATGCTAATATCTGGAGATGTTGATTTTGCTCCAGCACTTCACATTCTCGGTCAGCGCGGATATACTGTAATTCTTGTCATCCCTGCTGGGGTGGGTGTTTCATCTGCCCTATGCAATGCTGGTAAATTTGTATGGGACTGGCCTAGTGTGGCTCGTGGGGAAGGTTTTGTTCCCCCCTCAAAGGCGTTATTTCCACCTCGTGGAAGTTCAATTGAGCTTGCTGGATACCTGATGGGGTGCCATATCAGTGACAACTCTGATGGACAAAATGAAGAGGAAGCAATACTTTATAGAGGGATGTCACAGAACTATTATAACTCGAGGGACTTCTCAATGGTGTCACAATCTTTGGCTGAATACAACTATGGCACACCGAACATGTCTTGCTTTCCAACAACTGTGAGATCACATAGCCTTCCACCTGGATTGAATGATGTTTCAGTAGGACACATGCCTTCTAATGACAATAATGATGACGTGTTATGGGTACAGCCTGGGGATTTAAATGGTCTCAAGGGCCAGCTAGTAAGGTTGCTCGAAATTTCTGGAGGATGCATGCCTCTGGCCCGAGTTCCAGCTGAGTACCAGAAAATGTATGGGAAACCTCTATATATATCTGATTATGGGGCAATGAAGTTGGTCAATCTTTTCAAGAAGATGAGCGATACACTAGCTGTTGAAGGGAAAGGGCATCGTAAATTTGTGTATCTCAGAAACTGGAAGGCATGCCCTAGTGCTCCCCCTTTGGTGCTGGCGAAGAAAAATAAGAAGAGAAAGGGGGTCCAGGAAGAGAGTGCAAATAGTTTCGCTGGTGGTTGCTCTTCAGATGAATTATCGGATGAAGAAAGAGCAGTCATAGGTGAACATGGTGAAAGAAGTTGCATAGGGAAGGGTAATCAGGTGAGAGCTACGAGAAGTGAAGTCGATGACCGTATTCTTGAGCAGTTTAAGTATGAACTGCAAGAGATTCTAGTCAGCTATTCTTGTCAAATATTCTTAGGTTGTTTCGAGGCTGTATACCAGCAACGGTACAAGAAAGAACTGGAATATCAGAGATTTGGTGTGGACAAGTTGGAGGATTTGTTTGCAATTGTGAGTGATGTGGTAGTATTGCATGAGGAACCACTTAGCAAGCGGAAGTTCCTGGCTGCTGTTGGTTGTTAA 1596 0.443 MATPSKSAPILSSPSLEQKGKNMNESNANMLQCPLNQQLRISSDGPVSILWDIENCSIPTDVRPEDVAGNIRMALQVHPIIKGAVMMFSAYGDFNAFPRRLREGCQRTGVKLIDVPNGRKDAADKAILVDMFLFALDNPPPSSIMLISGDVDFAPALHILGQRGYTVILVIPAGVGVSSALCNAGKFVWDWPSVARGEGFVPPSKALFPPRGSSIELAGYLMGCHISDNSDGQNEEEAILYRGMSQNYYNSRDFSMVSQSLAEYNYGTPNMSCFPTTVRSHSLPPGLNDVSVGHMPSNDNNDDVLWVQPGDLNGLKGQLVRLLEISGGCMPLARVPAEYQKMYGKPLYISDYGAMKLVNLFKKMSDTLAVEGKGHRKFVYLRNWKACPSAPPLVLAKKNKKRKGVQEESANSFAGGCSSDELSDEERAVIGEHGERSCIGKGNQVRATRSEVDDRILEQFKYELQEILVSYSCQIFLGCFEAVYQQRYKKELEYQRFGVDKLEDLFAIVSDVVVLHEEPLSKRKFLAAVGC* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0472 531 PANTHER LIMKAIN B LKAP 33 526 IPR024768 GO:0005777|GO:0010468|GO:1903231
Lan18g0472 531 CDD LOTUS 312 381 - -
Lan18g0472 531 ProSiteProfiles OST-type HTH domain profile. 456 530 IPR025605 -
Lan18g0472 531 Pfam NYN domain 47 186 IPR021139 GO:0004540
Lan18g0472 531 Gene3D - 451 523 IPR041966 -
Lan18g0472 531 Gene3D - 311 380 IPR041966 -
Lan18g0472 531 Pfam OST-HTH/LOTUS domain 314 379 IPR025605 -
Lan18g0472 531 Pfam OST-HTH/LOTUS domain 457 519 IPR025605 -
Lan18g0472 531 MobiDBLite consensus disorder prediction 1 22 - -
Lan18g0472 531 CDD LOTUS 457 519 - -
Lan18g0472 531 Gene3D - 42 192 - -
Lan18g0472 531 CDD PIN_limkain_b1_N_like 46 172 - -
Lan18g0472 531 ProSiteProfiles OST-type HTH domain profile. 311 383 IPR025605 -
Lan18g0472 531 PANTHER - 33 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0472 Lan-Chr18 9085363 9087534 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0472 47 197 C2H2 Transcription Factor Family AT5G61190 43.046 3.42e-28 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0472 - - gmx:100818186 905.59