Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0464 ATGGCTCAGGTTCAGGCTCAGAATGTGGTGCAGGGTCCTAATGGTGGTGCTGGTGCTGGTGCTGAGAACCAGTTAGTGACGACGTCGCTTTACGTCGGAGATCTTGACCCTAGTGTGACGGATTCTCAGCTCTATGACCTGTTCAACCAGTTGGGTCAGGTTGTGTCTGTTAGGGTTTGCAGGGACTTAACCACTGGGAGATCGCTCGGTTATGGCTACGTCAATTACAGCAACCCCCAAGATGCTGCCAGATCATTGGATGTTCTGAACTTCACTCCTCTCAACAACAAGTCCATCCGTATCATGTACTCTCACCGTGATCCCAGTATTCGTAAAAGCGGGTCAGGAAATATTTTTATCAAGAATTTGGACAGGGCAATTGACCACAAGGCATTACATGATACCTTTTCTTCATTTGGGAACATCCTTTCTTGCAAGGTGGCTACAGATTCATCTGGTAACTCAAAAGGCTATGGCTTTGTTCAATTTGATAATGAGGAATCTGCTCAAAAAGCCATTGAGAAGCTGAATGGCATGCTGCTGAATGATAAACAAGTTTACGTGGGACCCTTCCTTCGCAAGCAAGAGAGAGAAGTTTCAGTTGACAAGGTCAAATTCAACAACGTTTTTGTGAAGAACATATCTGAGTCAACCACTGATGATGAACTGAAGAAGGTTTTTGGTGAGTTTGGACCAATTACCAGTGCTGTAGTGATGAGGGATGGGGATGGGAAATCAAGGTGCTTTGGATTTGTGAACTTTGAGAATACTGATGATGCTGCTCAAGCTGTCGATGCTCTTAATGGGAAAAAGTTTGACGAAAAGGAGTGGTATGTTGGAAAAGCTCAAAAGAAATCTGAGAGGGAGCAGGAGTTGAAAATTAAGTTTGAGCAGAGTGTGAAGGAAGCAGCTGATAAATATCAAGGAGCAAACTTGTATGTGAAAAATTTAGATGATAGCATTGGTGATGAAAAACTTAAGGAGCTGTTCTCCCCTTTTGGTACCATCACCTCTTGCAAGGTTATGAGAGACCCTAATGGTATAAGTCGAGGATCTGGATTTGTTGCATTCTCGACCCCTGAGGAGGCATCTAGAGCTCTCGCGGAGATGAATGCCAAATTGGTGGTAAGCAAACCTCTATATGTGACTCTGGCCCAAAGGAAAGAAGATAGAAGAGCTAGACTGCAGGCTCAATTTGCGCAAATGCGCCCTCTTGCAATTGCACCCTCTGCTGCTCCTCGTGTGCCATTGTATCCCCCTGGTGGTCCAGGTATTGGTCAACAGATATTTTATGGTCAAGGCCCTCCTGCTATGATTCCTTCCCAGCCTGGGTTTGGGTATCAACAACAACTTGTGCCTGGTTTGAGGCCCGGTGGAGCTCCTGTGCCAAATTTCTTTTTGCCAATGGTTCAGCAGGGACAACAGGGTCAGCGCCCAGGTGGAAGACGTGTCGGTGGAGTCCAGCAGTCCCAGCAGCCGGTTCCTCTTCTGCCACAGCAGATGCTTCCCAGGGGACGTGTGTATCGTTATCCTCCCCCCGGTAGGGGCATTCCTGAAGTTGCTGGAGGCATGTTTTCTGTTCCATATGATGTCAGCGGAGTGCCGATCCGTGATGCAGGACTCTCCCAGCAAATTCCTATCGGAGCTTTGGCTTCTGCTCTGGCAAATGCTTCTCCAGAGCAGCAGAGGACGATGCTGGGTGAGAATCTTTACCCTCTGGTGGAACAGTTGGAGCCCGAAAATGCTGCCAAGGTGACTGGCATGCTTCTGGAGATGGACCAGACTGAAGTTCTGCACTTGCTTGAGTCACCCGAGGCCCTGAAAGCGAAAGTAGGTGAGGCGATCGAAGTCCTGAGGAATGTCGCACAGCAGCAGGCTGGTGGTGCGGCTGATCAGTTGTCTTCATTATCATTGAACGACAACCTTGTTTCTTGA 1935 0.4796 MAQVQAQNVVQGPNGGAGAGAENQLVTTSLYVGDLDPSVTDSQLYDLFNQLGQVVSVRVCRDLTTGRSLGYGYVNYSNPQDAARSLDVLNFTPLNNKSIRIMYSHRDPSIRKSGSGNIFIKNLDRAIDHKALHDTFSSFGNILSCKVATDSSGNSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGPFLRKQEREVSVDKVKFNNVFVKNISESTTDDELKKVFGEFGPITSAVVMRDGDGKSRCFGFVNFENTDDAAQAVDALNGKKFDEKEWYVGKAQKKSEREQELKIKFEQSVKEAADKYQGANLYVKNLDDSIGDEKLKELFSPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALAEMNAKLVVSKPLYVTLAQRKEDRRARLQAQFAQMRPLAIAPSAAPRVPLYPPGGPGIGQQIFYGQGPPAMIPSQPGFGYQQQLVPGLRPGGAPVPNFFLPMVQQGQQGQRPGGRRVGGVQQSQQPVPLLPQQMLPRGRVYRYPPPGRGIPEVAGGMFSVPYDVSGVPIRDAGLSQQIPIGALASALANASPEQQRTMLGENLYPLVEQLEPENAAKVTGMLLEMDQTEVLHLLESPEALKAKVGEAIEVLRNVAQQQAGGAADQLSSLSLNDNLVS* 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0464 644 CDD RRM3_I_PABPs 206 285 - -
Lan18g0464 644 Gene3D - 542 625 - -
Lan18g0464 644 CDD RRM4_I_PABPs 309 387 - -
Lan18g0464 644 SUPERFAMILY PABC (PABP) domain 491 636 IPR036053 GO:0003723
Lan18g0464 644 Pfam Poly-adenylate binding protein, unique domain 554 618 IPR002004 GO:0003723
Lan18g0464 644 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 28 106 IPR000504 GO:0003723
Lan18g0464 644 SMART rrm1_1 208 280 IPR000504 GO:0003723
Lan18g0464 644 SMART rrm1_1 117 189 IPR000504 GO:0003723
Lan18g0464 644 SMART rrm1_1 29 102 IPR000504 GO:0003723
Lan18g0464 644 SMART rrm1_1 311 383 IPR000504 GO:0003723
Lan18g0464 644 SUPERFAMILY RNA-binding domain, RBD 28 196 IPR035979 GO:0003676
Lan18g0464 644 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 29 619 IPR006515 GO:0003723
Lan18g0464 644 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 118 186 IPR000504 GO:0003723
Lan18g0464 644 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 30 100 IPR000504 GO:0003723
Lan18g0464 644 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 312 379 IPR000504 GO:0003723
Lan18g0464 644 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 209 277 IPR000504 GO:0003723
Lan18g0464 644 Gene3D - 198 292 IPR012677 -
Lan18g0464 644 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 188 IPR000504 GO:0003723
Lan18g0464 644 PANTHER RNA BINDING PROTEIN 17 628 - -
Lan18g0464 644 SMART rrm2_1 29 102 IPR003954 GO:0003676
Lan18g0464 644 SMART rrm2_1 208 280 IPR003954 GO:0003676
Lan18g0464 644 SMART rrm2_1 117 189 IPR003954 GO:0003676
Lan18g0464 644 SMART rrm2_1 311 383 IPR003954 GO:0003676
Lan18g0464 644 CDD RRM2_I_PABPs 114 190 IPR045305 -
Lan18g0464 644 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 310 387 IPR000504 GO:0003723
Lan18g0464 644 Gene3D - 105 197 IPR012677 -
Lan18g0464 644 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 284 IPR000504 GO:0003723
Lan18g0464 644 Gene3D - 293 395 IPR012677 -
Lan18g0464 644 Gene3D - 1 103 IPR012677 -
Lan18g0464 644 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 546 623 IPR002004 GO:0003723
Lan18g0464 644 SMART poly_2 558 621 IPR002004 GO:0003723
Lan18g0464 644 CDD RRM1_I_PABPs 29 108 - -
Lan18g0464 644 PANTHER POLYADENYLATE-BINDING PROTEIN 17 628 - -
Lan18g0464 644 SUPERFAMILY RNA-binding domain, RBD 207 391 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0464 Lan-Chr18 9005578 9010589 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0464 27 643 Eukaryotic Initiation Factors Gene Family AT1G49760 73.885 0.0 906