Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0458 ATGATGGAGCCTGATACAAAAGGGTACTATAACATTCTTGGTGTTAGCTCAGAATCTTCCATTGAAGAAATAAGGCGTGCTTATAAGAAGCTTGCAAGGCAATGGCATCCAGATAGGTTGACAAAAACGCCTTCTTTATTAGGTGAAGCCAAACACAAATTCCAGCAAATTCAAGAAGCTTATTCAGTGTTATCAGACCCTAAGAAAAGAACCATGTATGATGTAGGCTTTTATGATCCTAAAGAGGAAGAGGATGAGGGATTTTCTGATTTTGTGGAAGAAATGGTGACCCTTATGGCTCAAGTTAGAAGAGAGGAGAAAGTTTATGGATTGGAGGAGTTGCAGTCCATGTTTATGGAAATGGCTGAAGGGTTCAAGACTCATTCAATGTATGGTGAAGGACCTTCGGTGCTTGAGGAATCCCCGTGCTCAAAGAGGACACGTTTGGACACAAACATGACCAGCAATAAAGGGTCACATTTTCAAGTACCTACAACCTTAAACTTGTATGAAACAAGGGGTTACTGCAATTAA 534 0.4045 MMEPDTKGYYNILGVSSESSIEEIRRAYKKLARQWHPDRLTKTPSLLGEAKHKFQQIQEAYSVLSDPKKRTMYDVGFYDPKEEEDEGFSDFVEEMVTLMAQVRREEKVYGLEELQSMFMEMAEGFKTHSMYGEGPSVLEESPCSKRTRLDTNMTSNKGSHFQVPTTLNLYETRGYCN* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0458 177 PANTHER PUTATIVE, EXPRESSED-RELATED 4 175 - -
Lan18g0458 177 CDD DnaJ 9 66 IPR001623 -
Lan18g0458 177 ProSiteProfiles dnaJ domain profile. 8 77 IPR001623 -
Lan18g0458 177 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 4 175 - -
Lan18g0458 177 SUPERFAMILY Chaperone J-domain 5 80 IPR036869 -
Lan18g0458 177 Pfam DnaJ domain 9 74 IPR001623 -
Lan18g0458 177 ProSitePatterns Nt-dnaJ domain signature. 54 73 IPR018253 -
Lan18g0458 177 PRINTS DnaJ domain signature 10 28 IPR001623 -
Lan18g0458 177 PRINTS DnaJ domain signature 28 43 IPR001623 -
Lan18g0458 177 PRINTS DnaJ domain signature 49 69 IPR001623 -
Lan18g0458 177 SMART dnaj_3 7 69 IPR001623 -
Lan18g0458 177 Gene3D DnaJ domain 5 130 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0458 Lan-Chr18 8832234 8834281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0458 9 74 C2H2 Transcription Factor Family AT1G74250 52.239 8.46e-16 72.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g0458 18 8832234 8834281 Lan6g0827 6 7595543 7597414 LSH