Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0457 ATGCCAACAAATGAGATCACTAAAATGGAAGAAGGAGGAGCTAAAGATTCAGGGTTTTGTGGTTCTCCTGAGGTTGTTCAAATCATACAGAAGGTAATTGCAGAGGTGATAGGGACATATTTCTTAGTATTTGCAGGGTGTAGCGTGGTAGTATTGAACAAATTGGAAGGTAGTAAAGGAACCATAACATTTCCAGGAATATGTATAGTATGGGGTATAACAGTAATGATCTTAGTTTATGCTCTTGGTCACATCTCTGGTGCTCATTTTAATCCTGCAGTCACTGTCAGCTTCGCCATCTATCGTCATTTCCCTTTGAAACAGATACCTTTGTATCTTATAGCACAAGTGTTAGGATCTATTCTTGCAAGTGGGACATTGTATCTTCTGTATGATGATCTAGATGAGAATTCTTATTTTGGAACAGTACCTGTAGGGGCTCATATGAAATCTTTTATCTTGGAGATACTCACTTCATTTCTATTGATGTTTGTTGTATCTGCAGTTTCCACAGACAATAGAGCGATTGGAGAAATGGCAGGGATAGCTGTTGGTATGACAGTCTTAATAGACGTCTTCATTGCAGGGCCTGTGTCAGGAGCTTCTATGAACCCAGCCAGAAGCCTTGGACCTGCAGTGGTGATGCATATTTTTGATGGATTCTGGCTTTATATAGTTGGACCTTTTCTTGGGGCCATACTAGGTGCCTCAGCTTATAACCTAATTAGATTTACTGAGAAACCACTTAGGGAAATCGGTGCAAGCTCAACTTTCCTCAAAACCATGTCCAGAGCAAATACTTTTCGGTAG 810 0.4025 MPTNEITKMEEGGAKDSGFCGSPEVVQIIQKVIAEVIGTYFLVFAGCSVVVLNKLEGSKGTITFPGICIVWGITVMILVYALGHISGAHFNPAVTVSFAIYRHFPLKQIPLYLIAQVLGSILASGTLYLLYDDLDENSYFGTVPVGAHMKSFILEILTSFLLMFVVSAVSTDNRAIGEMAGIAVGMTVLIDVFIAGPVSGASMNPARSLGPAVVMHIFDGFWLYIVGPFLGAILGASAYNLIRFTEKPLREIGASSTFLKTMSRANTFR* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0457 269 PANTHER AQUAPORIN NIP2-1 11 265 IPR034294 -
Lan18g0457 269 Pfam Major intrinsic protein 26 239 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan18g0457 269 Gene3D Glycerol uptake facilitator protein. 3 253 IPR023271 -
Lan18g0457 269 PRINTS Major intrinsic protein family signature 30 49 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan18g0457 269 PRINTS Major intrinsic protein family signature 71 95 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan18g0457 269 PRINTS Major intrinsic protein family signature 108 127 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan18g0457 269 PRINTS Major intrinsic protein family signature 154 172 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan18g0457 269 PRINTS Major intrinsic protein family signature 185 207 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan18g0457 269 PRINTS Major intrinsic protein family signature 222 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan18g0457 269 SUPERFAMILY Aquaporin-like 27 250 IPR023271 -
Lan18g0457 269 CDD MIP 30 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan18g0457 269 PANTHER AQUAPORIN NIP4-1 11 265 - -
Lan18g0457 269 TIGRFAM MIP: MIP family channel proteins 34 239 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan18g0457 269 ProSitePatterns MIP family signature. 89 97 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0457 Lan-Chr18 8828904 8832112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0457 4 266 Major Intrinsic Protein MIP AT5G37810 57.621 4.48e-112 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0457 K09874 - gmx:100819179 381.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g0457 18 8828904 8832112 Lan6g0831 6 7626099 7628742 LSH