Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0443 ATGGAGCAGATTGTGGACGTTGGATCTGTGGCTGAAGCAGTTTCAACAGATGTTGGTGACGCCCCTCTCTACGTCGTTGAAAGTCTCTGCATGCGTTGTGGTGAAAACGGAATCACAAGATTTTTGCTCACTTCCATTCCTAACTTCAGAAAGATTTTGTTGTCTGCGTTCGAATGTACTCACTGTAATGAGAGGAACAATGAAGTTCAGTTTGCTGGTGAAATTCAATCCCGTGGTTGCAGTTACTCTCTGAAGATCCCATCGGGCGATCCGAAGATGCTCAATAGGCAAGTGGTAAAATCAGAATCTGCTACCATTAAGATACCAGAATTGGATTTTGAGATTCCACCAGAGGCTCAGCGTGGTAGTCTGTCAACGGTAGAAGGGATACTAATGCGAGCTGCCGAGGAACTTGAGGTCCTTCAAGAGGAACGCAAAAGAGTGGCTCCGGAGACAGCTAAAGCACTTGATCTGTTCTTGGTGAAACTGCGAGCCTGTGCAACAGGAGAATCACTGTTTACATTTTTTATTGACGATCCTGCTGGAAACAGCTTCATTGAAAATCCGTTTGCACCATCAACTGATCCATCACTGACTATCAAGTTTTATGAGCGAACTCCTGATCAACAAGCATTATTGGGATATCTAGCTGATCCTACACAGATTACTCATGATGAAGCACAGGCAGTGGATGAAGCTGGGGTCTCTGGTCAAGTGAGGAGAGAACCACATGGATCAATAGGGGCAGCAGCCGGTCATCGGGCAATTGCACAGAGTAATAGTGCGGAAATTGCAGATGCCTTGTTTCGGTATACTGCACCAGAAGAGGTGATGACTTTCCCATCAACTTGTGGTGCTTGTGTCACTCAGTGTGAGACTCGGATGTTTGTAACCAATATTCCATACTTCCAAGAAGTAATCGTTATGGCATCTACATGTGATTCTTGTGGTTACCGCAACTCTGAGTTGAAACCCGGTGGAAGGATTCCTGAAAAAGGAAAAACAATTACTCTTCATGTAAAGAATGTCAAAGACCTAAGCCGAGATGTAATAAAGTCTGATACTGCTAGCGTAAAGGTTCCGGAAGTTGACTTGGAGCTGACAAGTGGCACTCTTGGAGGAGCTGTTACAACTGTTGAAGGTTTGATTACAAAAATAAGTGAAAGCCTTGAGAGGGTCCATGGGTTTACTTTTGGAGATAGTCTGCAAGAAGATAGGAAAAACAAATGGCTTGACTTTAGCACCAGGCTAACCAAGCTTCTTAGCTTGGAAGAACCTTGGACTTTGATTCTTGACGATGCATTAGCCAATTCTTTTGTAGCACCTGCAACTGATGATCTGGCAGCTGACAAACAATTAACGTTTGAGGAATACGAGAGGTCATGGGAGCAAAATGAAGAATTAGGTCTGAACGACATCGACACTTCTTCGGCCGATGCTGCCTATGAATCAGCAAACACTACAAAAATTGAGTGA 1476 0.4417 MEQIVDVGSVAEAVSTDVGDAPLYVVESLCMRCGENGITRFLLTSIPNFRKILLSAFECTHCNERNNEVQFAGEIQSRGCSYSLKIPSGDPKMLNRQVVKSESATIKIPELDFEIPPEAQRGSLSTVEGILMRAAEELEVLQEERKRVAPETAKALDLFLVKLRACATGESLFTFFIDDPAGNSFIENPFAPSTDPSLTIKFYERTPDQQALLGYLADPTQITHDEAQAVDEAGVSGQVRREPHGSIGAAAGHRAIAQSNSAEIADALFRYTAPEEVMTFPSTCGACVTQCETRMFVTNIPYFQEVIVMASTCDSCGYRNSELKPGGRIPEKGKTITLHVKNVKDLSRDVIKSDTASVKVPEVDLELTSGTLGGAVTTVEGLITKISESLERVHGFTFGDSLQEDRKNKWLDFSTRLTKLLSLEEPWTLILDDALANSFVAPATDDLAADKQLTFEEYERSWEQNEELGLNDIDTSSADAAYESANTTKIE* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0443 491 TIGRFAM ZPR1_znf: ZPR1 zinc finger domain 283 474 IPR004457 GO:0008270
Lan18g0443 491 TIGRFAM ZPR1_znf: ZPR1 zinc finger domain 30 209 IPR004457 GO:0008270
Lan18g0443 491 PANTHER ZINC FINGER PROTEIN ZPR1-RELATED 3 484 - -
Lan18g0443 491 Gene3D ZPR1, zinc finger domain 272 327 IPR042452 -
Lan18g0443 491 Gene3D ZPR1, zinc finger domain 20 73 IPR042452 -
Lan18g0443 491 Coils Coil 124 144 - -
Lan18g0443 491 PANTHER ZINC FINGER PROTEIN ZPR1 3 484 IPR040141 -
Lan18g0443 491 Gene3D ZPR1, A/B domain 328 470 IPR042451 -
Lan18g0443 491 Gene3D ZPR1, A/B domain 74 215 IPR042451 -
Lan18g0443 491 SMART zpr1 282 442 IPR004457 GO:0008270
Lan18g0443 491 SMART zpr1 28 188 IPR004457 GO:0008270
Lan18g0443 491 MobiDBLite consensus disorder prediction 466 491 - -
Lan18g0443 491 Pfam ZPR1 zinc-finger domain 282 440 IPR004457 GO:0008270
Lan18g0443 491 Pfam ZPR1 zinc-finger domain 28 187 IPR004457 GO:0008270
Lan18g0443 491 MobiDBLite consensus disorder prediction 468 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0443 Lan-Chr18 8537761 8547518 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0443 2 490 C2H2 Transcription Factor Family AT5G22480 74.694 0.0 757
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0443 K06874 - gmx:100798741 828.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0833 17 10276334 10284212 Lan18g0443 18 8537761 8547518 LSH