Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0429 ATGTTAGGTGGCCTCTACGGAGACCTTCCTCCACCCTCTTCCGCCGAAGACGACAAATCCATCAACTCCTCCAATGTCTGGTCAACCACCACCAAAATGGCCCCCGCCACGCTCCGTAAACCCGCAACCGTTTTCACTCCTCCGTTAACCGTCCTAAGATCCCAATCCAAGTCCAAAAACCCTAACCCTACCAAAACAGTAGTTTCAGCCACGCCGGTGGTGTCGGTATCGTTGCCGGACAATGTTGTTCATCAACAGGCTCTGGTGGGCGTCCAGTCGACGGTTATCGAGGAGTACGATCCGGCCAGGCCGAACGACTACGAGGAGTATCGGAGGGAGAAGAAGAGGAAGGCGAGGGAGGCGGAGGTGGCGAGGGAGTTAGAGAGACGGAGGCAAGAGGAGGAGGAGAGAGAGAGGATTGAGAGAGATAGTATTAATAATGTTAGTAAGGATTCTTCTAGGTTGAATATTTCTGGTGAGGAGGCATGGAGGAGACGAGCTGCGATGAGTGGCGGTGGTGGAAGCAGTACTGCAGCAGTGCCGCGATCCCCGTCACCACCGAGCAATGTGGATGGGTTTAGTATTGGGAAATCGGAGACGGGTGGGTTGGGGCTTGGGGCGGGTGGGCAGATGACTGCGGCGCAGAGGATGATGGCGAAGATGGGGTGGAAGGCAGGGCAAGGGCTTGGGAAGCAGGAGCAAGGGATTACCACTCCGTTGATGGCGAAGAAAACAGATAGGCGAGCCGGAGTTATTGTGAATGCTAGTGACAATAGCAAGGTGGAGAAGAAAGCGGTGAAGAGTGCTAACTTCCATGGGGTGCCTACAAGGGTGTTGTTGCTTAGGAACATGGTTGGCCCTGGTGAGGTAGATGACGAGCTAGAAGAGGAGGTAGGATCAGAATGTGCCAAGTATGGGACAGTAACCCGGGTACTGATATTTGAGATAACAGAGGTAAATTTCCCTGTTGATGAAGCAGTAAGAATCTTTGTGCAGTTTGAGAGATCAGAAGAAACAACTAAAGCACTTGTTGACCTTGATGGTCGGTTTTTTGGAGGTAGAGTGGTTCGTGCCTCGTTTTATGATGAGGAGAAGTTCAATAAGAATGAGTTGGCTCCAATGCCGGGAGAAATTCCTGGCTTCTTTTGA 1149 0.5196 MLGGLYGDLPPPSSAEDDKSINSSNVWSTTTKMAPATLRKPATVFTPPLTVLRSQSKSKNPNPTKTVVSATPVVSVSLPDNVVHQQALVGVQSTVIEEYDPARPNDYEEYRREKKRKAREAEVARELERRRQEEEERERIERDSINNVSKDSSRLNISGEEAWRRRAAMSGGGGSSTAAVPRSPSPPSNVDGFSIGKSETGGLGLGAGGQMTAAQRMMAKMGWKAGQGLGKQEQGITTPLMAKKTDRRAGVIVNASDNSKVEKKAVKSANFHGVPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEVNFPVDEAVRIFVQFERSEETTKALVDLDGRFFGGRVVRASFYDEEKFNKNELAPMPGEIPGFF* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0429 382 MobiDBLite consensus disorder prediction 1 25 - -
Lan18g0429 382 SUPERFAMILY RNA-binding domain, RBD 278 366 IPR035979 GO:0003676
Lan18g0429 382 CDD RRM_UHM_SPF45 275 371 IPR034653 -
Lan18g0429 382 PIRSF SPF45 143 378 IPR040052 GO:0045292
Lan18g0429 382 PIRSF SPF45 3 151 IPR040052 GO:0045292
Lan18g0429 382 MobiDBLite consensus disorder prediction 176 195 - -
Lan18g0429 382 SMART rrm2_1 278 359 IPR003954 GO:0003676
Lan18g0429 382 Coils Coil 107 144 - -
Lan18g0429 382 MobiDBLite consensus disorder prediction 166 209 - -
Lan18g0429 382 Pfam G-patch domain 213 252 IPR000467 GO:0003676
Lan18g0429 382 PANTHER SPLICING FACTOR 45 SPF45 1 373 IPR040052 GO:0045292
Lan18g0429 382 MobiDBLite consensus disorder prediction 110 141 - -
Lan18g0429 382 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 277 363 IPR000504 GO:0003723
Lan18g0429 382 SMART G-patch_5 208 254 IPR000467 GO:0003676
Lan18g0429 382 ProSiteProfiles G-patch domain profile. 210 256 IPR000467 GO:0003676
Lan18g0429 382 Gene3D - 273 371 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0429 Lan-Chr18 8306169 8308479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0429 216 258 C2H2 Transcription Factor Family AT5G26610 53.488 5.25e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0429 K12840 - gmx:100800998 465.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g0429 18 8306169 8308479 Lan6g0862 6 8037657 8042427 LSH