Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0425 ATGGCGTGGCGGGAGCTTGGAAAGAAGGGAATATATGTGAGTTTTACCAGAACTTTGACTACAACTCCATTTAGACATTTGGCGGGGTCAACTTTTACCTCTAGGTTTGCCAAACAATTTGGCTATGCATCAGCAAGGTCCATACCAGATTGCATCAGCTGCTCATCTATGGCAGTGGCTGGTTTTTCCAGTGGAACTAAAGAATGTGGGATACGGCGCTTCCATGCTAGTCCAGGAGTCCGGGCAAGAAGTGATCAAACTTTCGGTTTAAAGACACCAAAGAGGGAGAAGTATGTGAGGAAGGACAATAGAAACCAGCCACCCGTTGAAGCTCGATATGTCCCTCCTACTGTCAAAGCTACAAAATCTGGTCCAGTTAAAACGATAGAAATATTTGAAGGAATGACCATTGCTGAATTTGCAAAGCGTTCTGGAAAATCAGTAACTTTTTTGCAGGGTATCCTTACAAATGTCGGTGAAAAGGTTCAATCAGAGTTTGAGCCTCTCAGCATGGATATTGCAGAGCTTGTTGCAATGGAAGTTGGTGTCAATGTTAAGAGGCTACATACAGCTGAAGGTTCAGAAATTTTACCACGTCCTGCAGTTGTAACAGTGATGGGTCATGTCGATCATGGTAAAACTTCTCTTCTCGATGCCTTGCGTTCAACATCAGTGGCAGCCAAGGAGGCAGGCGGCATAACTCAGCATGTAGGTGCCTTTGTGGCGATTATGCCATCAGGAGCATCAATCACATTTCTTGACACTCCTGGTCATGCTGCATTTAGTGCAATGCGGGCAAGAGGTGCAGCAGTCACAGATATAGTAGTGCTGGTTGTTGCTGCAGATGATGGAGTGATGCCTCAAACGCTTGAAGCCATGTCCCATGCAAAAGCAGCTAATGTACCAATTGTTGTTGCAATTAATAAATGTGATAAACCAGGTGCAAATCCTGAAAGAGTAAAACTGCAGCTTGCTTCAGAGGGCTTACTGCTGGAGGAGATGGGTGGAGATGTTCAGGTCGTTGAAGTTTCGGCCGCCAAAAAAACTGGACTGGATAACCTAGAGGAAGCTCTACTCCTCCAGGGTGAAATAATGGATCTGAAAGCACGCATTGATGGGCCTGCTCAAGCTTATGTGGTGGAAGCAAGACTAGACAAAGGACGGGGTCCATTGATAACCACTATAGTGAAGGCAGGGACTCTAGCTTGTGGTCAGCATGTGGTTGTAGGCTCAGAGTGGGGAAGAATAAGGGCTATTAAAGATATGGTGGGGAGAATAACTCAGCGAGCAACTCCTGCAATGCCTGTTGAAATCGAAGGGCTTAGAGGGCTGCCGATGGCTGGTGATGATGTTATTGTTGTTCATTCTGAGGAGCGAGCTAGAATGCTTAGTTCTGGTAGGAAACGAAAATATGAAGAGGACAGGCTTAGGAAGATGATGATCAAGGACCAACCATCTACATCGGAATTATCTGAGGGCGAGGAGGTTCCACAGAGGGTTGAAATGCCAGTTATAGTAAAAGCAGATGTTCAGGGAACTGTTCAAGCCATCACAGATGCTTTGAGAACTTTAAATAGTGCTCAGGTTTTTGTTAATGTTGTCCATGTTGGTGTTGGGCCTATTTCTCAATCAGATGTGGACCTAGCACAAGCTTGTGGTGCATGCATAGTTGGATTTAATGTCAAGAATCCACCAACTTCTCTTAGTCAAGCAGCTAGTCGTGCCAGTATCAAGGTAATTTTGCATCGGGTGATATACCACCTTTTGGAGGACATCGGCAATTTGATAATAGAAAAGGCCCCTGGCACTTCTGAGACCCACATAGCTGGGCAAGCAGAGGTGCTGAGTATCTTCGAAGTCAAAGGAAGCAAAACGAAGGGACCTGATGTGAAGATAGCTGGTTGCAAAGTCGTCGATGGTTTTGTGGCTAGGTCATCAACTATGAGGCTTCTGAGGAGCGGGGAAGTTGTGTATGAAGGACCTTGCACATCTCTTAAGAGGGAGAAGCAGGATGTGGACAATGTGAAGAAGGGGAATGAATGTGGACTAGTAATCAGTGATTGGCAAGATTTTCAGATTGGAGATGTTATTCAATGCTTAGAACAAATTGTGAGGAAGCCTAAGTTTATTAAGTCAGAGAGTGGTGCTGTTAGAATTGAGTGCTGA 2166 0.452 MAWRELGKKGIYVSFTRTLTTTPFRHLAGSTFTSRFAKQFGYASARSIPDCISCSSMAVAGFSSGTKECGIRRFHASPGVRARSDQTFGLKTPKREKYVRKDNRNQPPVEARYVPPTVKATKSGPVKTIEIFEGMTIAEFAKRSGKSVTFLQGILTNVGEKVQSEFEPLSMDIAELVAMEVGVNVKRLHTAEGSEILPRPAVVTVMGHVDHGKTSLLDALRSTSVAAKEAGGITQHVGAFVAIMPSGASITFLDTPGHAAFSAMRARGAAVTDIVVLVVAADDGVMPQTLEAMSHAKAANVPIVVAINKCDKPGANPERVKLQLASEGLLLEEMGGDVQVVEVSAAKKTGLDNLEEALLLQGEIMDLKARIDGPAQAYVVEARLDKGRGPLITTIVKAGTLACGQHVVVGSEWGRIRAIKDMVGRITQRATPAMPVEIEGLRGLPMAGDDVIVVHSEERARMLSSGRKRKYEEDRLRKMMIKDQPSTSELSEGEEVPQRVEMPVIVKADVQGTVQAITDALRTLNSAQVFVNVVHVGVGPISQSDVDLAQACGACIVGFNVKNPPTSLSQAASRASIKVILHRVIYHLLEDIGNLIIEKAPGTSETHIAGQAEVLSIFEVKGSKTKGPDVKIAGCKVVDGFVARSSTMRLLRSGEVVYEGPCTSLKREKQDVDNVKKGNECGLVISDWQDFQIGDVIQCLEQIVRKPKFIKSESGAVRIEC* 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0425 721 Pfam Translation-initiation factor 2 492 592 IPR023115 -
Lan18g0425 721 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 199 389 IPR027417 -
Lan18g0425 721 Gene3D Translation factors 371 486 - -
Lan18g0425 721 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 198 368 IPR000795 GO:0003924|GO:0005525
Lan18g0425 721 TIGRFAM small_GTP: small GTP-binding protein domain 201 354 IPR005225 GO:0005525
Lan18g0425 721 Hamap Translation initiation factor IF-2 [infB]. 4 707 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Lan18g0425 721 Pfam Elongation factor Tu GTP binding domain 203 359 IPR000795 GO:0003924|GO:0005525
Lan18g0425 721 Gene3D - 196 370 IPR027417 -
Lan18g0425 721 Gene3D - 498 602 IPR036925 -
Lan18g0425 721 CDD mtIF2_IVc 610 699 - -
Lan18g0425 721 PANTHER TRANSLATION INITIATION FACTOR IF-2, MITOCHONDRIAL 73 712 - -
Lan18g0425 721 Gene3D Translation factors 605 706 - -
Lan18g0425 721 TIGRFAM IF-2: translation initiation factor IF-2 127 705 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Lan18g0425 721 CDD IF2_mtIF2_II 374 469 IPR044145 -
Lan18g0425 721 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 73 712 IPR015760 -
Lan18g0425 721 SUPERFAMILY Translation proteins 372 454 IPR009000 -
Lan18g0425 721 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 498 609 IPR036925 -
Lan18g0425 721 SUPERFAMILY Translation proteins 606 705 IPR009000 -
Lan18g0425 721 CDD IF2_eIF5B 202 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0425 Lan-Chr18 8233028 8239498 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0425 199 590 Eukaryotic Initiation Factors Gene Family AT1G21160 26.087 3.94e-26 113