Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0400 ATGGATGATTACAATTTCTTTCCAGAGGAATGCAACTTGGACAGTTTATTTGATGTTGATGATGAAGAGTTTCTTTCACATGACATACCAAATCCAGTGCAAGTGAACACAAGTAGCAACTCATCCAGCATCACTGAAAATTTGTCACCAAAACTTTCCCCAACATCCTCAATCTCCTCTTTTCAGTCTCAGATTCTGTCTTTAGACAACATCACCACCCAGTTTTATGGGTTTGACTGTGCCTTAAACCCTCCAATACCATATGAGGCTGTGTCAGTGCCCCAGTTGGGAAATACACATATTCAAGCTCAAACAACAAAAGGGTCCTCAAAAAATCAAAACTTTGGAACAAAAACAATACTTGGTAAGAGATCTGCAGCTCATACTCATGATCATATCATGGCTGAGAGAAAGCGAAGAGAGAAGCTTAGCCAAAGCTTGATTGCTCTTGCAGCCCTTATTCCTGGTCTAAAGAAGATGGACAAGGCTTCTGTACTAGGAGATGCTATAAAGCATGTTAAAGAGCTTAAAGAGCGTGTAGCAATTTTGGAAGAAGAAGAAGATAGCAAGAAGAAAAGTGTGGTGGTTCTCAAGGAGCCAAATCTAAATGGTGATAATGATGATTCTTCATCATGTGATGATGAGAGCATTGAAAATTCAAGTGGTATTGAACCACTCCTCCAAGTGGAAGCAAGAATCTCAGGGCAAGAGGTGCTACTTCGGATCCATTGTCAAAAGCAAAAGGGTCTTGTGGTCAAAATATTGGCACTGATTCAAAGCCTGAACCTCTTTGTTGCCAATAGCAGTGTCTTACCCTTTGGAAATTCTACTCTTGAGATTACCTTCATTGCTCAGATAGGAGAAGGTTACAATTTGACCGTAAAAGATCTTGTAAAGAATATACGCACGGCTACATTGAAGTGTATGTCATAA 933 0.3987 MDDYNFFPEECNLDSLFDVDDEEFLSHDIPNPVQVNTSSNSSSITENLSPKLSPTSSISSFQSQILSLDNITTQFYGFDCALNPPIPYEAVSVPQLGNTHIQAQTTKGSSKNQNFGTKTILGKRSAAHTHDHIMAERKRREKLSQSLIALAALIPGLKKMDKASVLGDAIKHVKELKERVAILEEEEDSKKKSVVVLKEPNLNGDNDDSSSCDDESIENSSGIEPLLQVEARISGQEVLLRIHCQKQKGLVVKILALIQSLNLFVANSSVLPFGNSTLEITFIAQIGEGYNLTVKDLVKNIRTATLKCMS* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0400 310 MobiDBLite consensus disorder prediction 29 53 - -
Lan18g0400 310 Gene3D - 126 198 IPR036638 GO:0046983
Lan18g0400 310 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 127 176 IPR011598 GO:0046983
Lan18g0400 310 MobiDBLite consensus disorder prediction 194 219 - -
Lan18g0400 310 Pfam Helix-loop-helix DNA-binding domain 132 176 IPR011598 GO:0046983
Lan18g0400 310 Coils Coil 166 193 - -
Lan18g0400 310 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 131 194 IPR036638 GO:0046983
Lan18g0400 310 MobiDBLite consensus disorder prediction 30 53 - -
Lan18g0400 310 PANTHER BHLH TRANSCRIPTION FACTOR 35 310 - -
Lan18g0400 310 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 35 310 - -
Lan18g0400 310 SMART finulus 133 182 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0400 Lan-Chr18 7597651 7618727 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0400 107 304 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 46.535 2.77e-50 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan18g0400 HLH 5.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0400 - - lang:109330753 395.201