Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0396 ATGCCCAAACACAGAATATCTTGTATGCTTTCTTTTTTAGGTGAAACTTATCTTAATTTTTATGCAGGAGTTCCATGGACCGAGGAAGAACATAGAAGGTTTTTACTTGGATTACAGAAGCTGGGAAAAGGCGATTGGCGTGGAATTTCAAGGAACTATGTTATATCTAGGACACCAACTCAAGTGGCCAGTCATGCTCAGAAGTATTTCGTCAGGCAAAGCAATGTGTCTAGGAGGAAAAGGCGTTCTAGCTTGTTTGATATTGTTGCTGATGAAGCAGCCGAAGCTCCAATAGTAGAGCATGATTTCTTGTCTACTAATCAGTTTGAAGCTGAAACAGAAGGCAATGACCCCTTGCTTGGTCCTCCTACCCTCGATGAAGAGTGCGAATCCATGGTTTCGACTAACTCGAATGATGGCGAGCCTGCAGGCCCTGAACCATCAAATCCTGATGATAACTCACAATCATCTTATCCAGTGATGTATCCTGCATACTATCCTCCTTTTTTCCCATTTCCTCTGCCGTATTGGTCAGGGTATAGTCCAGCCGAGCCCGTAAAGAAGGAGGAGACGCATGAAGTGCTGAAGCCAACTGCAGTACATTCTAAAAGCCCTCTCAATGTTGATGAACTTGTTGGCATGTCCAAACTGAGTTTAGGAGAGACTATTGGTAACTCTGGCCCCTCTACATTGAAACAAAAACTTCAAGAAGAAGGACCCTCTAGACAGTCAGCTTTTCATGCAACTTCGGCGGCAACCGCGTGTGGTAGTTCGAATATAAATGGCAGTGTTATCCATGCAGTTTAA 807 0.4387 MPKHRISCMLSFLGETYLNFYAGVPWTEEEHRRFLLGLQKLGKGDWRGISRNYVISRTPTQVASHAQKYFVRQSNVSRRKRRSSLFDIVADEAAEAPIVEHDFLSTNQFEAETEGNDPLLGPPTLDEECESMVSTNSNDGEPAGPEPSNPDDNSQSSYPVMYPAYYPPFFPFPLPYWSGYSPAEPVKKEETHEVLKPTAVHSKSPLNVDELVGMSKLSLGETIGNSGPSTLKQKLQEEGPSRQSAFHATSAATACGSSNINGSVIHAV* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0396 268 Gene3D - 24 76 - -
Lan18g0396 268 PANTHER TRANSCRIPTION FACTOR KUA1 23 255 - -
Lan18g0396 268 SUPERFAMILY Homeodomain-like 23 75 IPR009057 -
Lan18g0396 268 PANTHER OS01G0187900 PROTEIN 23 255 - -
Lan18g0396 268 MobiDBLite consensus disorder prediction 129 156 - -
Lan18g0396 268 ProSiteProfiles SANT domain profile. 26 74 IPR017884 -
Lan18g0396 268 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 25 74 IPR017930 -
Lan18g0396 268 SMART sant 22 72 IPR001005 -
Lan18g0396 268 MobiDBLite consensus disorder prediction 222 242 - -
Lan18g0396 268 ProSiteProfiles Myb-like domain profile. 25 70 IPR001005 -
Lan18g0396 268 MobiDBLite consensus disorder prediction 110 156 - -
Lan18g0396 268 Pfam Myb-like DNA-binding domain 25 70 IPR001005 -
Lan18g0396 268 CDD SANT 25 70 IPR001005 -
Lan18g0396 268 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 23 73 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0396 Lan-Chr18 7484932 7487285 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lan18g0396 Myb_DNA-binding 3.5e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0396 - - ccaj:109807943 373.629
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g0968 6 9090753 9095932 Lan18g0396 18 7484932 7487285 LSH
Lan18g0396 18 7484932 7487285 Lan17g0954 17 13238209 13241557 LSH