Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0395 ATGACCCGAAAATGCTCACATTGCAGCCACAATGGGCACAACTCTCGTACATGCCCGAACCGAGGGGTGAAGCTATTCGGGGTTCGATTAACTGATGGCTCGATCCGTAAGAGTGCCAGCATGGGCAATCTTTCTCACTATGCTGGATCCAATTCTCCCGGTGTCGAAACCACTGATCACGGTGCTGCTGCCGTTGCTGATGGTTATGCTTCCGAGGATTTCCTTCCTGGCTCATCTTCTACTTCCCGTGAAAGAAAAAAAGGAGTTCCATGGACCGAGGAAGAACATAGAAGGTTTTTACTTGGATTACAGAAGCTGGGAAAAGGCGATTGGCGTGGAATTTCAAGGAACTATGTTATATCTAGGACACCAACTCAAGTGGCCAGTCATGCTCAGAAGTATTTCGTCAGGCAAAGCAATGTGTCTAGGAGGAAAAGGCGTTCTAGCTTGTTTGATATTGTTGCTGATGAAGCAGCCGAAGCTCCAATAGTAGAGCATGATTTCTTGTCTACTAATCAGTTTGAAGCTGAAACAGAAGGCAATGACCCCTTGCTTGGTCCTCCTACCCTCGATGAAGAGTGCGAATCCATGGTTTCGACTAACTCGAATGATGGCGAGCCTGCAGGCCCTGAACCATCAAATCCTGATGATAACTCACAATCATCTTATCCAGTGATGTATCCTGCATACTATCCTCCTTTTTTCCCATTTCCTCTGCCGTATTGGTCAGGGTATAGTCCAGCCGAGCCCGTAAAGAAGGAGGAGACGCATGAAGTGCTGAAGCCAACTGCAGTACATTCTAAAAGCCCTCTCAATGTTGATGAACTTGTTGGCATGTCCAAACTGAGTTTAGGAGAGACTATTGGTAACTCTGGCCCCTCTACATTGAAACAAAAACTTCAAGAAGAAGGACCCTCTAGACAGTCAGCTTTTCATGCAACTTCGGCGGCAACCGCGTGTGGTAGTTCGAATATAAATGGCAGTGTTATCCATGCAGTTTAA 1002 0.4661 MTRKCSHCSHNGHNSRTCPNRGVKLFGVRLTDGSIRKSASMGNLSHYAGSNSPGVETTDHGAAAVADGYASEDFLPGSSSTSRERKKGVPWTEEEHRRFLLGLQKLGKGDWRGISRNYVISRTPTQVASHAQKYFVRQSNVSRRKRRSSLFDIVADEAAEAPIVEHDFLSTNQFEAETEGNDPLLGPPTLDEECESMVSTNSNDGEPAGPEPSNPDDNSQSSYPVMYPAYYPPFFPFPLPYWSGYSPAEPVKKEETHEVLKPTAVHSKSPLNVDELVGMSKLSLGETIGNSGPSTLKQKLQEEGPSRQSAFHATSAATACGSSNINGSVIHAV* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0395 333 MobiDBLite consensus disorder prediction 1 20 - -
Lan18g0395 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 83 139 IPR017930 -
Lan18g0395 333 ProSiteProfiles SANT domain profile. 91 139 IPR017884 -
Lan18g0395 333 PANTHER TRANSCRIPTION FACTOR KUA1 1 325 - -
Lan18g0395 333 PANTHER BNAC07G34310D PROTEIN 1 325 - -
Lan18g0395 333 MobiDBLite consensus disorder prediction 175 221 - -
Lan18g0395 333 CDD SANT 90 135 IPR001005 -
Lan18g0395 333 SMART sant 87 137 IPR001005 -
Lan18g0395 333 ProSiteProfiles Myb-like domain profile. 83 135 IPR001005 -
Lan18g0395 333 SUPERFAMILY Homeodomain-like 85 140 IPR009057 -
Lan18g0395 333 MobiDBLite consensus disorder prediction 194 221 - -
Lan18g0395 333 Gene3D - 89 141 - -
Lan18g0395 333 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 86 138 IPR006447 GO:0003677
Lan18g0395 333 Pfam Myb-like DNA-binding domain 90 135 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0395 Lan-Chr18 7479141 7483564 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lan18g0395 Myb_DNA-binding 4.8e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0395 - - ccaj:109807943 517.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g1149 17 19240450 19242966 Lan18g0395 18 7479141 7483564 LSH