Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lan18g0381 | ATGGGAAAAGAAGGACCTTGTTATCACTGTGGAGTTATAAGCACACCACTTTGGCGCAATGGGCCACCAGAGAAGCCAGTACTATGCAATGCATGTGGATCTCGATGGAGGACAAAGGGAACGCTTGCAAATTATACCCCTTTACATGCTCGGGCAGAAACTGATAATGACAATCAAAGGGTTTCCAGGGTAAAGATCTTACCATTAAATAAGAACAAAGAAGTGAAATTACTTAAAAGAAAGGTTGGACAAACTGATTATGCTGTTTCGGGAGGGTTTGCACCTGATTACGACCAAGGATTCCGAAAGGTTGTAGATGAAGATACGAGCAATAGGTCAAGTTCAGGGTCAGTCATCTCTAACACAGAGAGCTGTGCTCAATTTGGTGGCACAGATGCTAGTGATTTCACAGGTCCTGCTCAGTCAGTGGTCTGGGAAGCTATGGTGCCTGCGAAAAAGAGGACGTGTGGAGGTCGTCCGAAGCATTCTTCTGTTGAGAAGCTCACCAAAGATTTATGTACTATCCTTCATGAACAACAGTCTTATTTGTCAGCAACTTCTGAAGAGGATCTTCTTTTTGAAAGTGAAACACCAATGGTCTCTGTTGAGATAGGACATGGAAGCATTCTCATTAGGCATCCTAGCACTATTGCTCGTGAAGAAGAGTCCGAAGCTAGCTCTCTTTCGGTCGATAATAAACAATGCCTAATGAGTGAGGCATATTCATGTTCTGGTGGTATTCCTGTGTACAGTAATTACAATGGCAAAGTTATGCAAGCGGAGGAACTTAAAAGGGACAAGTCTAAGATTGAAAAACTACAAGACCTTGGAGATCACGATTCACCATTGCGCTTAATAGATTTAAATGACGTAGTGAACTATGAGGAGTTTATAAAAAACTTGACAAATGAAGAGCAGCAACAATTGCTGAAGTATCTTCCTGTGGCTGATACTTCTGAAGTTCCTAATAGCCTTACAATGATGTTCAGTAGCTCTCAATTCAAGGAGAACTTAACTTATTTCCAGCAACTCCTCAGGGAAGGTGTCTTTGATATCTCTTTGTTGGGGGGAAAACCTGGAGACTGCGAAACCTTGAAAAGGCTTGCATTATCTAATCTTTCAAAGTCAAAATGGGTAGAACACTATAATTTTCTCAAGAGTTGTAAAGATAGAGCTGGAAAATCTATTGCTATGGGCTCTCCTGGTATGGCATCTAGTGATGTAGTGCATGTCAAGAGATTGCGTGACAGCGAAAATCCCGATCTTCCAGAATTGACGAAAACAATGACGACCCCGAAAAGTGTGACTGTAAAGGCTGGATGTGAGGGAAAAGAAGTTGCAGAAGATGGTTCCTGCTTCAATGCAAAAAGCCTATTTGCGTTGCCTCGTGATCATAGCTCGCACATGATGGATTCTTTAAACTTTGAGTACGAGAATTCTGATCAGGATCTGCTGCTAGATGTGCCATCGAATGGCTTTTTTCCACAGGCAGAGCTCCTGCACCCTACTGCAAGCTTTGATGCTCAAGCCAGCACCAGTAGTAGCTCAATATACTCACATGTTGCCCATTATTAG | 1575 | 0.4241 | MGKEGPCYHCGVISTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAETDNDNQRVSRVKILPLNKNKEVKLLKRKVGQTDYAVSGGFAPDYDQGFRKVVDEDTSNRSSSGSVISNTESCAQFGGTDASDFTGPAQSVVWEAMVPAKKRTCGGRPKHSSVEKLTKDLCTILHEQQSYLSATSEEDLLFESETPMVSVEIGHGSILIRHPSTIAREEESEASSLSVDNKQCLMSEAYSCSGGIPVYSNYNGKVMQAEELKRDKSKIEKLQDLGDHDSPLRLIDLNDVVNYEEFIKNLTNEEQQQLLKYLPVADTSEVPNSLTMMFSSSQFKENLTYFQQLLREGVFDISLLGGKPGDCETLKRLALSNLSKSKWVEHYNFLKSCKDRAGKSIAMGSPGMASSDVVHVKRLRDSENPDLPELTKTMTTPKSVTVKAGCEGKEVAEDGSCFNAKSLFALPRDHSSHMMDSLNFEYENSDQDLLLDVPSNGFFPQAELLHPTASFDAQASTSSSSIYSHVAHY* | 525 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lan18g0381 | 524 | PANTHER | GATA TRANSCRIPTION FACTOR-LIKE PROTEIN | 1 | 523 | - | - | |
Lan18g0381 | 524 | ProSitePatterns | GATA-type zinc finger domain. | 7 | 32 | IPR000679 | GO:0006355|GO:0043565 | |
Lan18g0381 | 524 | Gene3D | - | 4 | 66 | IPR013088 | GO:0006355|GO:0008270 | |
Lan18g0381 | 524 | SMART | GATA_3 | 1 | 55 | IPR000679 | GO:0006355|GO:0043565 | |
Lan18g0381 | 524 | Gene3D | - | 273 | 373 | IPR038108 | - | |
Lan18g0381 | 524 | PANTHER | OSJNBB0038F03.10 PROTEIN | 1 | 523 | IPR044589 | - | |
Lan18g0381 | 524 | CDD | ZnF_GATA | 6 | 53 | IPR000679 | GO:0006355|GO:0043565 | |
Lan18g0381 | 524 | Pfam | GATA zinc finger | 7 | 41 | IPR000679 | GO:0006355|GO:0043565 | |
Lan18g0381 | 524 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 4 | 45 | - | - | |
Lan18g0381 | 524 | ProSiteProfiles | GATA-type zinc finger domain profile. | 7 | 40 | IPR000679 | GO:0006355|GO:0043565 | |
Lan18g0381 | 524 | Pfam | Asx homology domain | 266 | 351 | IPR028020 | - | |
Lan18g0381 | 524 | ProSiteProfiles | DEUBAD (DEUBiquitinase ADaptor) domain profile. | 279 | 391 | IPR044867 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lan18g0381 | Lan-Chr18 | 7222358 | 7227635 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lan18g0381 | 1 | 501 | C2C2-Gata Transcription Factor Family | AT4G17570 | 51.731 | 2.71e-149 | 436 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2C2-GATA | Lan18g0381 | ASXH | 3.9e-09 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lan18g0381 | - | - | gmx:100799745 | 725.702 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lan17g0405 | 17 | 2997860 | 3002157 | Lan18g0381 | 18 | 7222358 | 7227635 | LSH | |
Lan6g0954 | 6 | 8936493 | 8942588 | Lan18g0381 | 18 | 7222358 | 7227635 | LSH | |
Lan18g0381 | 18 | 7222358 | 7227635 | Lan17g0964 | 17 | 13548925 | 13554293 | LSH | |
Lan17g0405 | 17 | 2997860 | 3002157 | Lan18g0381 | 18 | 7222358 | 7227635 | PCT | |
Lan18g0381 | 18 | 7222358 | 7227635 | Lan6g0954 | 6 | 8936493 | 8942588 | PCT | |
Lan18g0381 | 18 | 7222358 | 7227635 | Lan18g0381 | 18 | 7222358 | 7227635 | PCT | |
Lan18g0381 | 18 | 7222358 | 7227635 | Lan17g0964 | 17 | 13548925 | 13554293 | PCT | |
Lan6g0954 | 6 | 8936493 | 8942588 | Lan18g0381 | 18 | 7222358 | 7227635 | PCT | |
Lan18g0381 | 18 | 7222358 | 7227635 | Lan17g0405 | 17 | 2997860 | 3002157 | PCT | |
Lan17g0964 | 17 | 13548925 | 13554293 | Lan18g0381 | 18 | 7222358 | 7227635 | PCT |