Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0380 ATGGCGAACCCTTCTTCCTCTTCTTCATCATCCTCCTCCCAATTCACCTATTCCTCCACTCCTTCCTACTTCCCTATGCCCTTCCACCTCCAACAACCCCCTTCCTACGCTCCGGCGCCACCCCCTCCCTCCGCCGTCACCTACTCCTACCCACAACCACCTCCGTCACAATTCCAGCGCGACGCTCAGCAACTCTTCCAGCGCGACGCTCAGACAATCACCCCCGAAGCCCTAGAAAACGTGAAAGCCGCTATCGCCAACAGCGAGATCGAGCACAAGACCGAGGCAAAGAAGAAATCCGTACCTCGACGCGCCGCGGGACTCACGTGGGAGGATCCGTCGCTCTCGGAGTGGCCTGAGAACGATCACCGGTTGTTCTGCGGCGATCTCGGGAACGAGGTGAACGACGACGTTTTGTCGAAGGCGTTCACAAAGTTCCCGTCGTTTAATATGGCGAAGGTGGTGAGAGATAAGAGGTCTGGGAAGACGAAGGGGTATGGGTTTGTGAGTTTTGCTGATCCTGCGGATTTGGCTGTGGCTTTGAAAGAGATGAATGGGAAGTACGTTGGGAATAGACCGATTAAGCTTTGTAAGAGTAAGTGGAGGGAGAGGATTGATGTTGATGCTGTGGAGAAGCAGAAGAAGCAGAGTAAGAAGAAGTCGAAATCGGCTAGGGTTGGTGTTTTGCATTATTGA 696 0.5374 MANPSSSSSSSSSQFTYSSTPSYFPMPFHLQQPPSYAPAPPPPSAVTYSYPQPPPSQFQRDAQQLFQRDAQTITPEALENVKAAIANSEIEHKTEAKKKSVPRRAAGLTWEDPSLSEWPENDHRLFCGDLGNEVNDDVLSKAFTKFPSFNMAKVVRDKRSGKTKGYGFVSFADPADLAVALKEMNGKYVGNRPIKLCKSKWRERIDVDAVEKQKKQSKKKSKSARVGVLHY* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0380 231 PANTHER RNA-BINDING PROTEIN 42-LIKE 35 230 - -
Lan18g0380 231 MobiDBLite consensus disorder prediction 28 50 - -
Lan18g0380 231 MobiDBLite consensus disorder prediction 209 231 - -
Lan18g0380 231 Gene3D - 56 197 IPR012677 -
Lan18g0380 231 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 125 195 IPR000504 GO:0003723
Lan18g0380 231 MobiDBLite consensus disorder prediction 216 231 - -
Lan18g0380 231 SUPERFAMILY RNA-binding domain, RBD 107 202 IPR035979 GO:0003676
Lan18g0380 231 MobiDBLite consensus disorder prediction 28 58 - -
Lan18g0380 231 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 123 201 IPR000504 GO:0003723
Lan18g0380 231 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 35 230 - -
Lan18g0380 231 CDD RRM_RBM42 117 199 IPR034215 -
Lan18g0380 231 SMART rrm1_1 124 197 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0380 Lan-Chr18 7217749 7220113 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0380 73 203 Eukaryotic Initiation Factors Gene Family AT1G71770 25.735 3.87e-12 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0380 K25079 - han:110936572 307.375