Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0378 ATGGAGGAAAGATATGAGCCATTGAAGGAACTTGGTTCTGGAAATTTTGGAGTTGCAAGGTTGGCCAAAGATAAGAAAACTGGAGAACTTGTTGCAGTCAAATATATAGAAAGAGGGAAAAAGATTGATGAGAATGTTCAGAGGGAGATAATTAACCACAGATCTTTAAAGCATCCAAATATTGTCAGGTTCAAAGAGGTCTTGCTGACCCCTTCTCATTTAGCTATTGTCTTGGAGTATGCTTCAGGTGGTGAACTCTTTGAAAGGATATGCACCGCCGGTCGATTTAGTGAAGATGAGGCAAGATATTTCTTTCAGCAGCTAATATCCGGGGTTAGCTACTGCCATTCAATGGAAATTTGTCATAGAGATCTGAAATTAGAAAACACTCTCTTGGACGGAAATCCATCTCCCCGGCTTAAAATTTGTGACTTCGGTTACTCCAAGTCTGCTATATTGCACTCTCAACCTAAATCAACAGTTGGAACTCCTGCATATATTGCTCCAGAGGTTCTGTCACGAAAGCAGTATGATGGAAAGATTGCAGATGTTTGGTCATGTGGTGTGACTCTGTATGTCATGTTAGTTGGTGCATACCCTTTTGAGGATCCTGAAGATCCTAGAAATTTCAGAAAGACTATTGGGCGAATAATAGGTGTTCAGTACTCCATACCAGACTATGTACGTGTTTCTGCAGAGTGTAGGAATCTTCTTTCTCGTATCTTTGTTGCTGATCCCGCGAAGAGGGTCAATCTTCCAGAGATAAAGCAGAACCCTTGGTTTTTGAAGAATTTGCCTAAAGAGATCATTGAAGCTGAAAAAGGTTATGAGGGAATACATAAAGACCAACAAAGCCAGAGTGTGGAAGAAATCATGAGGATCATTCAAGAGGCAAAGACACCCGGGCTAGGATTAAAAGCCAGTGATGGTGGCCAAGCTGCCACTGGATCGATGGATGTTGAGGATGATGTTGACGAGGAAGTTGATGAGGAGGAAGTCGATGTTAGTGTTGACTATGCAAATGTGTGA 1029 0.4169 MEERYEPLKELGSGNFGVARLAKDKKTGELVAVKYIERGKKIDENVQREIINHRSLKHPNIVRFKEVLLTPSHLAIVLEYASGGELFERICTAGRFSEDEARYFFQQLISGVSYCHSMEICHRDLKLENTLLDGNPSPRLKICDFGYSKSAILHSQPKSTVGTPAYIAPEVLSRKQYDGKIADVWSCGVTLYVMLVGAYPFEDPEDPRNFRKTIGRIIGVQYSIPDYVRVSAECRNLLSRIFVADPAKRVNLPEIKQNPWFLKNLPKEIIEAEKGYEGIHKDQQSQSVEEIMRIIQEAKTPGLGLKASDGGQAATGSMDVEDDVDEEVDEEEVDVSVDYANV* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0378 342 Pfam Protein kinase domain 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan18g0378 342 PANTHER SUCROSE NONFERMENTING 1(SNF1)-RELATED KINASE 3 334 - -
Lan18g0378 342 ProSitePatterns Serine/Threonine protein kinases active-site signature. 120 132 IPR008271 GO:0004672|GO:0006468
Lan18g0378 342 SMART serkin_6 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan18g0378 342 CDD STKc_SnRK2 4 260 - -
Lan18g0378 342 PANTHER SERINE/THREONINE KINASE 3 334 - -
Lan18g0378 342 Gene3D Transferase(Phosphotransferase) domain 1 81 268 - -
Lan18g0378 342 Gene3D Phosphorylase Kinase; domain 1 1 80 - -
Lan18g0378 342 ProSitePatterns Protein kinases ATP-binding region signature. 11 34 IPR017441 GO:0005524
Lan18g0378 342 ProSiteProfiles Protein kinase domain profile. 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan18g0378 342 MobiDBLite consensus disorder prediction 319 336 - -
Lan18g0378 342 MobiDBLite consensus disorder prediction 302 342 - -
Lan18g0378 342 SUPERFAMILY Protein kinase-like (PK-like) 3 267 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0378 Lan-Chr18 7091769 7096988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0378 4 273 CBL-interacting serine-threonine protein kinases AT4G24400 42.500 1.73e-69 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Lan18g0378 Pkinase 1.1e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0378 K14498 - gmx:100782714 595.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g0950 6 8901163 8905074 Lan18g0378 18 7091769 7096988 LSH
Lan18g0378 18 7091769 7096988 Lan6g0950 6 8901163 8905074 PCT
Lan18g0378 18 7091769 7096988 Lan18g0378 18 7091769 7096988 PCT
Lan6g0950 6 8901163 8905074 Lan18g0378 18 7091769 7096988 PCT