Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0370 ATGAAGTGTTTTTGCTTCAAAGACAAATCCAAATGTGCTGCAGAGTTGCAAAACCAAACCAAAAAGAAGGAAAACCCAGGTTTGAACCGTGTTACAAACTCCACCGGATCAATTTCATTACCACCAAAGAGTGTGAATGATTTGTACAAAGAGAAAGAGCATAACTTCAGAGTTTTTACTTTGCAAGAGCTAAGAGATGCTACAAATGGTTTTAATAGAATGTTGAAGATTGGAGAAGGGGGTTTTGGGAGTGTATATAAAGGATCCATTAGGCTTCAAGATGGACAAGGTGATCCAACTGTGGTTGCTATAAAAATGCTTAACACCCGTGGCTTTCAGGGTCATAAAGAATGGCTTGCAGAAGTGCAATTTCTCAGCATTGTTAATCATCCAAATTTGGTTAAGCTTTTGGGATACTGCTCCGTAGATGGAGAAAGAGGAATCCAACTGCTGTTGGTGTATGAATTCATGCCGAACAGGAGCTTGGAAGATCACCTTTTCAACAAAGCTTTTCCTCCCCTGCTTTGGAAAACAAGATTGGAGATCATGCTTGGTGCTGCCCGAGGATTAGCTTATCTACATGAGGATTTGGAGATTCAGGTGATCTACCGAGATTTTAAATCATCAAATGTTTTATTGGATATGGATTTCCACCCCAAGCTCTCAGATTTCGGTCTTGCCAGGGAAGGTCCGCAAGGTGATCAGACTCATGTATCTACTGCGGTAGTTGGGACACATGGATATGCTGCACCAGAGTATATTGAAACAGGTCATCTCAAAGTTCAGAGTGACATGTATAGTTTTGGTGTTGTACTCTATGAGATCCTCACAGGAAGGCGGTCATTGGAACGAAACCATCCAAGAGGGGAACAAAAGCTTCTAGACTGGGTTAAACAGTATCCTGCCGACACTAACAGATTCAGCATGATAATGGACCCGTGTCTGCGGAAACAATATTCTCCGGGCGCAGCCCGCAAAATAGCCAAGTTGGCCGATAACTGCTTAAAGAAGATTCCTGAAGATAGACCATCCATGAATCAAATAGTTGAAACCTTGAAGCAAGCATTGCAATATTCAGACTCATCAAGCAGTTCTCAGAATCCTGATGATTCTTCACGGTCGAACGTGGTTCGAAAAGGTAAATAG 1146 0.4206 MKCFCFKDKSKCAAELQNQTKKKENPGLNRVTNSTGSISLPPKSVNDLYKEKEHNFRVFTLQELRDATNGFNRMLKIGEGGFGSVYKGSIRLQDGQGDPTVVAIKMLNTRGFQGHKEWLAEVQFLSIVNHPNLVKLLGYCSVDGERGIQLLLVYEFMPNRSLEDHLFNKAFPPLLWKTRLEIMLGAARGLAYLHEDLEIQVIYRDFKSSNVLLDMDFHPKLSDFGLAREGPQGDQTHVSTAVVGTHGYAAPEYIETGHLKVQSDMYSFGVVLYEILTGRRSLERNHPRGEQKLLDWVKQYPADTNRFSMIMDPCLRKQYSPGAARKIAKLADNCLKKIPEDRPSMNQIVETLKQALQYSDSSSSSQNPDDSSRSNVVRKGK* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0370 381 Gene3D Phosphorylase Kinase; domain 1 51 156 - -
Lan18g0370 381 SUPERFAMILY Protein kinase-like (PK-like) 53 352 IPR011009 -
Lan18g0370 381 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL20-RELATED 13 375 - -
Lan18g0370 381 MobiDBLite consensus disorder prediction 356 373 - -
Lan18g0370 381 Pfam Protein tyrosine and serine/threonine kinase 76 352 IPR001245 GO:0004672|GO:0006468
Lan18g0370 381 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Lan18g0370 381 ProSiteProfiles Protein kinase domain profile. 71 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan18g0370 381 MobiDBLite consensus disorder prediction 356 381 - -
Lan18g0370 381 CDD STKc_IRAK 77 354 - -
Lan18g0370 381 ProSitePatterns Protein kinases ATP-binding region signature. 77 105 IPR017441 GO:0005524
Lan18g0370 381 PANTHER OS01G0588500 PROTEIN-RELATED 13 375 - -
Lan18g0370 381 Gene3D Transferase(Phosphotransferase) domain 1 157 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0370 Lan-Chr18 6976449 6982980 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0370 3 370 Glycoside Hydrolase AT3G07070 41.579 1.75e-88 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lan18g0370 PK_Tyr_Ser-Thr 9.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0370 - K00924 gmx:100305403 607.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0389 17 2912823 2915555 Lan18g0370 18 6976449 6982980 LSH
Lan6g0942 6 8844342 8847394 Lan18g0370 18 6976449 6982980 LSH
Lan18g0370 18 6976449 6982980 Lan17g0976 17 13774223 13777773 LSH
Lan17g0389 17 2912823 2915555 Lan18g0370 18 6976449 6982980 PCT
Lan18g0370 18 6976449 6982980 Lan6g0942 6 8844342 8847394 PCT
Lan18g0370 18 6976449 6982980 Lan18g0370 18 6976449 6982980 PCT
Lan18g0370 18 6976449 6982980 Lan17g0976 17 13774223 13777773 PCT
Lan6g0942 6 8844342 8847394 Lan18g0370 18 6976449 6982980 PCT
Lan18g0370 18 6976449 6982980 Lan17g0389 17 2912823 2915555 PCT
Lan17g0976 17 13774223 13777773 Lan18g0370 18 6976449 6982980 PCT