Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0365 ATGGACTTGTCCCAAACCATAGGCACAGATACTCAAACCCCACCCACCAAACCCAAGTCCTTATCTTTTATCAACGCCGCACTCAAACCCCACTCCACCACCACCACCATCGTCCCTCCGCCGTCATCCACGGTGGTTTCCTACAAAGCATGTCTTAAAAACCATGCTGCCAGCATAGGCGGCCATGCACTAGACGGCTGCGGCGAATTCATGCCTTCATCCTCCACCAACCCCACTGACCCCCGCTCTCTTAAATGCGCTGCATGTGGCTGCCACCGTAACTTCCACCGCCATGACCCTCGAGAACCACCACCCAACACTCCCACTTTCCTCACTTGCTTCTACTCCACCACCCCTTCTTCCGTCACACCCACCGTTCCACCACTACAGCAACCACTACCACAACTTATCCCCCACCGTGCCATGACCCCAAGCACTAGCCCAAGCCTCAGTTCTAGCCCAAGCCACAGTTATAGCCCCATTTCATCAACACCATCATCACCACCACCACTCTCTCACTTGCCACCTTCATACCCAGCACCCCACATGCTCTTAGCATTTGGCAACAACAACAACAATAATGCTTATTCTATTGACCATCAAAACAGAAACTTTCATTCTTCTTCATTGGTGCTTAAGACTGAGACAATTAACCTGGGCTGTAAGAAGAGGTACAGGACCAAGTTCAACCAGGAGCAGAAAGAGAAGATGTATGGCTTCTCTGAGAAATTGGGTTGGAGAATGCAGAAAGGTGATAGTGGATCTGTTCAAGAGTTTTGTAATGAGATTGGTGTCCCTAGAGGGGTCTTCAAAGTTTGGATGCACAACAATAAGAACACTTCAAGGAAGAAATCAGAAAATGGTATTCGTCAAATTGGAAACAATAATGGTGGCAGTGAAGATGGCGATGGTGATGGCATTAACAACTCGTTCAACATTAATAGCAGCAGCAACAATGATATTCAGAGAAATGAAGATAACTGTGTTGATGTTCATGTTTCTTTTAATGCATCATCATCGTAA 1023 0.4731 MDLSQTIGTDTQTPPTKPKSLSFINAALKPHSTTTTIVPPPSSTVVSYKACLKNHAASIGGHALDGCGEFMPSSSTNPTDPRSLKCAACGCHRNFHRHDPREPPPNTPTFLTCFYSTTPSSVTPTVPPLQQPLPQLIPHRAMTPSTSPSLSSSPSHSYSPISSTPSSPPPLSHLPPSYPAPHMLLAFGNNNNNNAYSIDHQNRNFHSSSLVLKTETINLGCKKRYRTKFNQEQKEKMYGFSEKLGWRMQKGDSGSVQEFCNEIGVPRGVFKVWMHNNKNTSRKKSENGIRQIGNNNGGSEDGDGDGINNSFNINSSSNNDIQRNEDNCVDVHVSFNASSS* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0365 340 Pfam ZF-HD protein dimerisation region 46 99 IPR006456 -
Lan18g0365 340 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 48 99 IPR006456 -
Lan18g0365 340 MobiDBLite consensus disorder prediction 140 162 - -
Lan18g0365 340 MobiDBLite consensus disorder prediction 286 325 - -
Lan18g0365 340 MobiDBLite consensus disorder prediction 138 175 - -
Lan18g0365 340 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 29 287 - -
Lan18g0365 340 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 222 279 IPR006455 -
Lan18g0365 340 MobiDBLite consensus disorder prediction 279 325 - -
Lan18g0365 340 Gene3D - 213 283 - -
Lan18g0365 340 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 48 99 IPR006456 -
Lan18g0365 340 SUPERFAMILY Homeodomain-like 216 283 IPR009057 -
Lan18g0365 340 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 9 29 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0365 Lan-Chr18 6905732 6907088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0365 46 289 ZF-HD Transcription Factor Family AT1G69600 42.972 2.95e-52 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lan18g0365 ZF-HD_dimer 3.3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0365 - - gmx:102660309 276.559