Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0363 ATGATGCTAGGGGAAGAACACCACCCAACGGTGCACGTGCCTCACGTGCCACCGTGGTCTTTCTTCGACGACGTTGTCTTTTCCCCTCTTTCCGTTAACGGCGACGTTAATGCCGTTAACGCTGGTGATTACTCTCCGTACTACTTGCACGAAGCACTTTCTGCGCTGCAGCGTTACCTTCCGTCGAACGACGACGGCGACGGTGACTCTGAGTTCGATATCCCGGCGATGGAGTTGGATTCTCCAGTGGATGCGTTTTCCTGTGACCATTTTAGAATGTTCGAGTTCAAGATTCGGAGGTGCGGGCGTGGCAGGTCACATGACTGGACGGAGTGTCCGTACGCGCATCCCGGAGAGAAGGCACGCCGGCGTGACCCGAGAAATTTTCATTACTCCGGCACGGCGTGTCCTGATTTTCGCAAAGGTGGATGCCAGAAGGGTGATGCATGTGAATTCTCACACGGCGTTTTCGAGTGCTGGCTACACCCGGCGCGTTACCGGACACAGCCATGTAAGGACGGTGTCAGTTGCCGGAGGAGAGTCTGTTTCTTCGCTCACACGGCGGAGCAACTTAGGGTTCTGCCTCAGCATAGTCCTCAAAGCGCTGACTCATATGATGGTTCACCTCTTCGGCTAAAAACACTGCAATTTATTCCATCTCCTGAATTGAATTCTCCAATGGAATCTCCTCCGGTGTCGCCGTTGACGCAGTCGATGGTGTTCTCGTTGCGAAACTTGCAACTTGAGAAGATGAAGTCGTTACCATCTTCTTGGAACATTCCAATTGGGTCTCCTCGGTTCGGATCTCCTATGGGACCCGTGACCCGACCCGGATTCTGCAGCCTGCCTTCCACTCCAACTACGCCGGGTCGGGCCGGGGTTAATTGTTTTGAACTGTGGGACCAGAGTTGTTGTGTGGAGGAGCCTGTGATGGAGCGGGTGGAATCTGGAAGAAATATAAGGGCCAAGATGTTTGAGAAGTTGAGCAAAGAGAATTCTCTTGGTAAACCGGGTTCGGGTCCGGGTAAAACCGGTGGAGCTTCCAATGTTCGTTGGGTTTTGGAGCAGTAA 1071 0.5322 MMLGEEHHPTVHVPHVPPWSFFDDVVFSPLSVNGDVNAVNAGDYSPYYLHEALSALQRYLPSNDDGDGDSEFDIPAMELDSPVDAFSCDHFRMFEFKIRRCGRGRSHDWTECPYAHPGEKARRRDPRNFHYSGTACPDFRKGGCQKGDACEFSHGVFECWLHPARYRTQPCKDGVSCRRRVCFFAHTAEQLRVLPQHSPQSADSYDGSPLRLKTLQFIPSPELNSPMESPPVSPLTQSMVFSLRNLQLEKMKSLPSSWNIPIGSPRFGSPMGPVTRPGFCSLPSTPTTPGRAGVNCFELWDQSCCVEEPVMERVESGRNIRAKMFEKLSKENSLGKPGSGPGKTGGASNVRWVLEQ* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0363 356 ProSiteProfiles Zinc finger C3H1-type profile. 131 157 IPR000571 GO:0046872
Lan18g0363 356 MobiDBLite consensus disorder prediction 331 356 - -
Lan18g0363 356 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 135 155 IPR000571 GO:0046872
Lan18g0363 356 PANTHER UNKEMPT FAMILY MEMBER 7 355 IPR045234 -
Lan18g0363 356 Gene3D - 127 201 - -
Lan18g0363 356 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 7 355 - -
Lan18g0363 356 SMART c3hfinal6 165 188 IPR000571 GO:0046872
Lan18g0363 356 SMART c3hfinal6 130 156 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0363 Lan-Chr18 6772069 6773435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0363 86 234 C2H2 Transcription Factor Family AT5G12850 56.688 2.66e-55 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lan18g0363 zf-CCCH 5e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0363 - - aprc:113867365 508.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g0363 18 6772069 6773435 Lan6g1160 6 11698733 11700144 LSH