Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0343 ATGCCTGTTCCACTTGCTCCTTATCCCACACCACCACCTTCAGCAGCAAATGCAGGTGCACAAAGTCAACTAGTCTGCTCTGGATGTAGAAACCTTCTACTCTATCCTGTTGGAGCCACCTCAGTGTGTTGTGCTGTTTGCAATGCAGTCACAGCAGTGCCACATCCTGGCACAGAAATGGCTCAGTTAGTTTGTGGAGGCTGTCATATTTTACTCATGTACACCCGTGGAGCAACAAGTGTTAAATGCTCTTGTTGTCACACCGTCAATCTAGCTTTGGAAGCCAATCAAGTGGCACATGTCAATTGTGGGAACTGCATAATGCTACTCATGTACCAGTATGGAGCAACATCCGTGAAATGTGCAGTTTGCAATTTTGTAACATCTGTTGGGGGAGAGAAAGCAATGGCAAAAACGGAGGAAGAGAAAGTGATAGCCCATGAGCGTGCAAAGGCTAGAAAAGCTAAAGCAAAGATGGAAATGCATGAAGCTAAAGCTAGGCATGCAGAAGAAAAGCTAAAGATCAAGCAATATAGTCTACCTAGTCATGAACCACCACTGGTTGGATCTCAGCAGCCACTTGGTGCAGTTGCCATGCCAGGAAACACCCATCCAAGTTATCCACTAGGTGGAAACCTTACAAGGAACAAGCATATATAG 660 0.4561 MPVPLAPYPTPPPSAANAGAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPHPGTEMAQLVCGGCHILLMYTRGATSVKCSCCHTVNLALEANQVAHVNCGNCIMLLMYQYGATSVKCAVCNFVTSVGGEKAMAKTEEEKVIAHERAKARKAKAKMEMHEAKARHAEEKLKIKQYSLPSHEPPLVGSQQPLGAVAMPGNTHPSYPLGGNLTRNKHI* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0343 219 Pfam Late embryogenesis abundant (LEA) group 1 133 172 IPR005513 GO:0009793
Lan18g0343 219 Pfam LSD1 zinc finger 26 50 IPR005735 -
Lan18g0343 219 Pfam LSD1 zinc finger 103 127 IPR005735 -
Lan18g0343 219 Pfam LSD1 zinc finger 65 89 IPR005735 -
Lan18g0343 219 PANTHER PROTEIN LOL1 1 137 - -
Lan18g0343 219 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 23 53 IPR005735 -
Lan18g0343 219 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 100 130 IPR005735 -
Lan18g0343 219 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 62 91 IPR005735 -
Lan18g0343 219 Coils Coil 145 174 - -
Lan18g0343 219 MobiDBLite consensus disorder prediction 195 219 - -
Lan18g0343 219 PANTHER PROTEIN LSD1 1 137 IPR040319 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0343 Lan-Chr18 6253015 6271702 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Lan18g0343 LEA_1 2.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0343 - - lang:109332401 415.231