Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0342 ATGGGTAGCAATTCAAGGGAGAAAAACATGAGATCAAATCCAAGGGCTAGATCATCATCATCATCATCATCAGCTGCAAACCCTGGTTTGGATTTGGATAATCCTATATCCAAGTCCATTGCTGAATCAGGTATGCAACCTTTGAACTATGATTCTTCTCTGCAAAACCCGAACCCTAATAATTGTTATGATCAAACTGGGTCGGGTTACTGCACTGAAGAACAATTGGAGGAGTTTCTGATGTTAAAATTGGAGTTTGTATACAATGAAGCGATTTCAAAGCTTGTTGGTTTGGGTTATAGTGAGAGTGCTTCTTTGAAGGCTGTTTTGAGCAATGGGCATTGTTATGGTGGCAAGGATTTGTTGGGTAACATTTTGAGCAACTCCATAAAGGCTTTGAATAGTTGCAATGATGATCAAAAAGAGCCTAAGACTGTGTTCTGTGATTTGAAGCAGTTAGAGAAGTATGCTTTGACTGGATTGGTGTGTTTGTTGCAACAACTTAGGCCTAATTTGAGTAAAGGTTATGCATTATGGTGTTTGCTCATGAGTGATCTTCATATTGGTAGGGCTGCTGCTATCAAAATTCCGGTGCCTGGTCATGGGTACCCTGTTGCTGTTCCTGCTGATCTGGCTTCGGCTGCTGCTGCTGTGACTTCGGCTGCCGCCGCGGCTGCTCTTGGGGGCCGTCGTAGCAATTCGGCTGGTGGCATGATTGCTCCTTGTCAGTCTCAGTTTCATGGGCGTTGGCAGGTTGCAGGAAGTGGCAGCAGCAGTGGTGGCGGCAGTGGCGAAGCCCCAGAGATGAATTTTCAGTTGCAAAGGGAAATTGAAATCCCAAAGAGGTTTGGTCTTACACCTTCAATGATGTCTGCATTGAAGAGAAATGTTGCTATGTTTGCTGCTGGTTGTAGGGCGAACTCGAAACAGTTGCAACCATTGACAAAGGGTATTTCTGGCAGTAGCAGTACCGTGTCAAATTTGGCTTTTCCAGCTGTTCCTGTCATGCCGAATGAGAAGTCTGGTGTTGGCCAGTGTCTTGATGACCAAGATATTATCAAAGACCTAGTGAGTAAGTTATTTGATCTAAGTCTTAATGAGATGGGACTTGTGACAGAAGATCAGAAGAATCAGGTCATAATCAATCTATTGCATCAGATTAAGGATCTCGAGAAACAGGTAGTGGAGCGACGAGAATGGGCTCAAGAGAAGGCACTGCAAGCAGCTAGAAAGCTAACCAGTGATATGACTGAGCTCAAAACCTTACGGATGGCAAGAGAGGAGATTCAGAGGCTGAAGCAAGGGAAACAGCCGCTCGATGATTCGACCATGAAGAAACTCTCAGAGAAGGAGAATGCTTTAAGATGTGCTAGTGTTGAATTGGATCGTGCAAATGCAGTTGCGAGGAAACTAGAGCAAGAGAATGCAGAAATCAGAGCAGAGATGGAGGCTTCCAAATTAAGTGCATCAGAAACAGTGATAGCTTGCAAGGAAGTTGCTAAAAGGGAGAAGAAGTTGCTGAAGAAGCTTCAGGCTTGGGAGAAACAGAAAGCTAAGATGCAGAAGGAAATTACTGATGAAAAAGAGAAGATAATGCAGACAGAAGAAGAGTTGGATCAGATTAGACAGATTAAAAAAGAAGCTGAGATCAAGTGGAAGGAGGAACTGAAGGCTAAAGAGAATGCCATAGGACTGGTTGAGGAGGAACGCCGTTCTAAGGAAGCAGATGAGTCCAATAATAAAAGGAAGATTGAGGCTTTACGTGTGAAGATTGAGATAGACTTCCAGCGTTATGAGGATGATGTACGAAGACTTGAGCAGGAGCTTTCTTGTCTTCAAGCAGCTGCTAAGTCCGCTGAGTTGCAATTAAATGCTTCACCTGAAAGTGGGTCTGAGGGTCCAAAAACTGAGACTGTTGCTAAGCTGCTTGAAGAATTGGATAATCTGGAGGACTTTTCAGAGAAAGATGAAGTCAATGGTGGCAGAGAATGCATTATATGCAAGAAAGATGAAGTCTCCATTGTTTTCTTGCCGTGTGCACACCAAGTTATCTGTGCCAGTTGCGGTGATTTGTATGGAAAATATGGCCAAGCTGCTTGTCCTTGCTGCCGGGTTCCGATCGAACAGAGAATCCGTGTATTCGGAGCAAGTTCTTAA 2157 0.4404 MGSNSREKNMRSNPRARSSSSSSSAANPGLDLDNPISKSIAESGMQPLNYDSSLQNPNPNNCYDQTGSGYCTEEQLEEFLMLKLEFVYNEAISKLVGLGYSESASLKAVLSNGHCYGGKDLLGNILSNSIKALNSCNDDQKEPKTVFCDLKQLEKYALTGLVCLLQQLRPNLSKGYALWCLLMSDLHIGRAAAIKIPVPGHGYPVAVPADLASAAAAVTSAAAAAALGGRRSNSAGGMIAPCQSQFHGRWQVAGSGSSSGGGSGEAPEMNFQLQREIEIPKRFGLTPSMMSALKRNVAMFAAGCRANSKQLQPLTKGISGSSSTVSNLAFPAVPVMPNEKSGVGQCLDDQDIIKDLVSKLFDLSLNEMGLVTEDQKNQVIINLLHQIKDLEKQVVERREWAQEKALQAARKLTSDMTELKTLRMAREEIQRLKQGKQPLDDSTMKKLSEKENALRCASVELDRANAVARKLEQENAEIRAEMEASKLSASETVIACKEVAKREKKLLKKLQAWEKQKAKMQKEITDEKEKIMQTEEELDQIRQIKKEAEIKWKEELKAKENAIGLVEEERRSKEADESNNKRKIEALRVKIEIDFQRYEDDVRRLEQELSCLQAAAKSAELQLNASPESGSEGPKTETVAKLLEELDNLEDFSEKDEVNGGRECIICKKDEVSIVFLPCAHQVICASCGDLYGKYGQAACPCCRVPIEQRIRVFGASS* 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0342 718 Coils Coil 556 576 - -
Lan18g0342 718 MobiDBLite consensus disorder prediction 1 30 - -
Lan18g0342 718 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 641 715 IPR013083 -
Lan18g0342 718 MobiDBLite consensus disorder prediction 1 37 - -
Lan18g0342 718 Coils Coil 447 488 - -
Lan18g0342 718 Coils Coil 373 393 - -
Lan18g0342 718 Coils Coil 588 622 - -
Lan18g0342 718 PANTHER OS05G0141500 PROTEIN 1 717 IPR046934 -
Lan18g0342 718 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 717 - -
Lan18g0342 718 Pfam Zinc finger, C3HC4 type (RING finger) 662 709 - -
Lan18g0342 718 Coils Coil 496 551 - -
Lan18g0342 718 Pfam Family of unknown function (DUF6592) 83 193 IPR046527 -
Lan18g0342 718 ProSiteProfiles Zinc finger RING-type profile. 664 704 IPR001841 -
Lan18g0342 718 SUPERFAMILY RING/U-box 642 710 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0342 Lan-Chr18 6222368 6227834 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0342 664 714 C3H Transcription Factor Family AT1G73950 43.137 1.01e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0342 - - adu:107483267 792.341