Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0329 ATGGATGACGTGAAAGACAAAGTAAAAGGTTTCATGAAAAAAGTCAACAACCCTTTTTCCTCTTCATCTTCAACTTCCAAATTCAAAGGCCAAGGTAGAGTCTTGGGTTCTTCTTCATCATCATCATCACCCTCTAATTCCATTCCCAATTCAAAACCCACTTCTTCTTCAACGAATCCCAAACCCTTGCCTCAAAAAACCATCAATTCGGATCAGAACAGAATCCAGAAAGCTGAAAAATCTGATCTTGATCGCAAACCAGGAAATGGGTTTGACCCTTTTGATTCTCTGGTCACTACAGGGAAGAGATCTCAAAATGGGTATTCATTGAATGTTTATGAATGCCCCATTTGTGGAAAATCGTGTAGATCTGAAGAAGAGGTTTCTGAACATGTGGATAGTTGTTTGAGTAACCCAATTGAAAGTGGTGTTGTCTCAGATAAGAATAATGAAGAAGTTGAGTGGAGTAATGGTGAATTGGAGGTTTGTGTTGGTACTTACATCTCAGGGAACCCATCTGAGGGATCAATTGATGTTGTTCTCAAATTGTTGAGAAATATTGTTCGGGAACCAGAGAATGCGAAATTTAGGAGGATCAGGATGAGTAATCCAAAGATCAAGGAGGCTGTTGGTGAGGTTATGGGTGGAGTTGAGTTGCTGAGTTTTGTAGGGTTCGAAATTCGGGAGGAGAATGGGGAGTCATGGGCAGTGATGGAGGTTCCTACGGAGGAGCAAATAAAATTGATTAAGAAATCAATTTTGTTACTGGAATCACAACTAGTTCAAGAGCCTTCAATGAGGGGGAATTTGGTGCCCGCAACTTCTGCTGAGATAGATGCAAAGGTCGCTGAACCGAAGCAGGTTGATAGACAGGTGAAGGTCTTCTTTTCCGTTCCTGAAAGTGTTGCAGCTAAAATCGAGCTACCAGATTCCTTCTATAAGCTTTCAGCCGAAGAAGTGAGAAGAGAAGCTGAATTAAGGAGAAAAAAGCTTCAAGAGTCTCAACTTTTAATCCCCAAGTCACTTAAAGAAAAACAAGCAAAAGCTGCCAGGAAGAGATACACAAAAACTATTATTAGGATTCAGTTTCCGGATGGAGTTGTACTTCAAGGTGTATTTTCTCCACTGGAATCAACTACTGCTCTCTATGAGTTTGTCAGCTCAGCGTTAAAAGAACCGGCTTTGGAATTTGAGCTAATCCATCCTGTACTAGTCCAGCGGCGGGTGATCCCTCATTTCCCTAAAGCAGGGGAAAGAGCTAAAACAATAGAGGAAGAGGATCTGGTACCTTCAGCTCTAGTTAAGTTCAAGCCCCTGGAAACAGATTCTGTTGTTTTCACTGGTCTAAGAAATGAATTGCTTGAAATCATTGAGCCACTTGTAAATGGCTAA 1392 0.4124 MDDVKDKVKGFMKKVNNPFSSSSSTSKFKGQGRVLGSSSSSSSPSNSIPNSKPTSSSTNPKPLPQKTINSDQNRIQKAEKSDLDRKPGNGFDPFDSLVTTGKRSQNGYSLNVYECPICGKSCRSEEEVSEHVDSCLSNPIESGVVSDKNNEEVEWSNGELEVCVGTYISGNPSEGSIDVVLKLLRNIVREPENAKFRRIRMSNPKIKEAVGEVMGGVELLSFVGFEIREENGESWAVMEVPTEEQIKLIKKSILLLESQLVQEPSMRGNLVPATSAEIDAKVAEPKQVDRQVKVFFSVPESVAAKIELPDSFYKLSAEEVRREAELRRKKLQESQLLIPKSLKEKQAKAARKRYTKTIIRIQFPDGVVLQGVFSPLESTTALYEFVSSALKEPALEFELIHPVLVQRRVIPHFPKAGERAKTIEEEDLVPSALVKFKPLETDSVVFTGLRNELLEIIEPLVNG* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0329 463 SUPERFAMILY Ubiquitin-like 323 436 IPR029071 -
Lan18g0329 463 MobiDBLite consensus disorder prediction 15 72 - -
Lan18g0329 463 Pfam UBX domain 353 403 IPR001012 GO:0005515
Lan18g0329 463 Pfam PUB domain 174 249 IPR018997 -
Lan18g0329 463 SUPERFAMILY PUG domain-like 172 255 IPR036339 -
Lan18g0329 463 Gene3D - 169 256 - -
Lan18g0329 463 ProSiteProfiles UBX domain profile. 352 436 IPR001012 GO:0005515
Lan18g0329 463 Coils Coil 314 334 - -
Lan18g0329 463 SMART PGNneu 175 242 - -
Lan18g0329 463 MobiDBLite consensus disorder prediction 1 100 - -
Lan18g0329 463 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 462 - -
Lan18g0329 463 MobiDBLite consensus disorder prediction 73 89 - -
Lan18g0329 463 CDD PUB 173 258 - -
Lan18g0329 463 Gene3D Classic Zinc Finger 109 139 - -
Lan18g0329 463 Gene3D - 346 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0329 Lan-Chr18 5824028 5827852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0329 1 384 C2H2 Transcription Factor Family AT2G01650 56.642 5.83e-141 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan18g0329 UBX 3.9e-05 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0329 K14011 - gmx:100779271 615.92