Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0313 ATGGCTGAACGTGGTGGTGCCAGCGAACGCGGAGGTGCTGGCGAACGCGGAGGTTTCGGCCGAGGCTTCGGTGGGGGCCGTGGAGGCCGCGGCGGCGACAGAGGCCGTGGAGGCCGCCGCAGAGGTCCCCGTCGCGAAGAAGAAGAAAAATGGGTCCCAGTAACCAAACTCGGCCGTCTCGTAAAAGACGGTAAAATCCGTTCCCTCGAACAGATCTACCTCCACTCACTCCCAATCAAGGAACACCAAATCATCGATACCCTTGTGGGCCCCTCACTCAAAGATGAGGTCATGAAAATCATGCCGGTTCAGAAACAGACCCGGGCCGGTCAGCGAACCCGGTTCAAGGCCTTCGTTGTCGTCGGCGACAACAACGGCCACGTTGGACTCGGTGTTAAGTGTAGTAAGGAGGTTGCGACCGCTATTCGTGGTGCTATTATTCTGGCGAAGCTTTCGGTCATTCCAGTGAGGAGAGGGTATTGGGGAAATAAGATTGGGAAGCCTCATACTGTTCCTTGTAAGGTTACTGGAAAGTGTGGTTCTGTAACTGTGAGGATGGTTCCGGCGCCTCGTGGTTCGGGGATTGTTGCTGCTAGAGTTCCTAAGAAGGTGTTGCAGTTTGCTGGGATTGATGATGTTTTTACTTCTTCTAGGGGATCCACTAAAACTCTTGGAAATTTTGTCAAGGCCACATTTGACTGTCTTCTGAAAACCTATGGTTTCCTAACACCCGAGTTCTGGAAGGAAACTCGTTTCTCTAAATCTCCATTCCAAGAGTACACAGATCTTTTGGCAAGGCCTACAACAAAGGCTCTGATCCTTGAGCAAGAAGAAAAGGCTGTGGAAGCTTGA 852 0.5211 MAERGGASERGGAGERGGFGRGFGGGRGGRGGDRGRGGRRRGPRREEEEKWVPVTKLGRLVKDGKIRSLEQIYLHSLPIKEHQIIDTLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWKETRFSKSPFQEYTDLLARPTTKALILEQEEKAVEA* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0313 283 PANTHER RIBOSOMAL S SUBUNIT 8 278 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lan18g0313 283 SUPERFAMILY Ribosomal protein S5 domain 2-like 169 249 IPR020568 -
Lan18g0313 283 ProSitePatterns Ribosomal protein S5 signature. 110 142 IPR018192 -
Lan18g0313 283 SUPERFAMILY dsRNA-binding domain-like 89 158 - -
Lan18g0313 283 MobiDBLite consensus disorder prediction 1 50 - -
Lan18g0313 283 Pfam Ribosomal protein S5, N-terminal domain 93 157 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lan18g0313 283 ProSiteProfiles S5 double stranded RNA-binding domain profile. 93 156 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lan18g0313 283 Gene3D - 156 249 IPR014721 -
Lan18g0313 283 MobiDBLite consensus disorder prediction 32 50 - -
Lan18g0313 283 Pfam Ribosomal protein S5, C-terminal domain 177 249 IPR005324 GO:0003735|GO:0005840|GO:0006412
Lan18g0313 283 Gene3D - 50 155 - -
Lan18g0313 283 PANTHER 40S RIBOSOMAL PROTEIN S2-1-RELATED 8 278 - -
Lan18g0313 283 TIGRFAM uS5_euk_arch: ribosomal protein uS5 46 253 IPR005711 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0313 Lan-Chr18 5469836 5471797 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0313 47 267 Cytoplasmic Ribosomal Protein Gene Family AT3G57490 92.308 9.61e-153 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0313 K02981 - gmx:100820352 464.151