LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan18g0295	ATGGATTGGAATGCAAAATCTCCCTCACAGTGGGATTGGGAGCAATCACTTTTCCTCAATGCAAAAGCAACTGAAATTTCCAAATCGCAGCCAAACTGGAATGGTGAAACAAACCAAGAAATCAATGTCGGGTTGATGGATACATATGGCGGCAGTGGTTGTTCTGGGTCTGAGCTAATACACACTTCTTCATCAAGAAGCTCAATATCGGCTTCCAACAATTCATCATCAAATAGGGATAGCAAAACGTCTATGTACACTCTTGAAAGTTCCCTTGATGATTCCAGTGGTAAAAAAGAATTGTCTAAAGTTGAAATTTCTCATGCACTAGAGTCCTCTTCTGTCTCGGGTGAACCACTGCTCTCTCTGAAACTTGGTAAGCGGCTGTACTTTGAGGATGTTTACCCTGGAAGTAATTCAAAGAGCCCATCTTTTTCCCGGGCTCCTATGTCATCTTTGGGTGCTGGAAAAAAGGGCAAGTCCAGTGGTCAGAATGTACAACTTACACGCTGCCAGGTTGAAGGCTGTGGCCTTGATCTCTCATCGGCTAAAGATTACCATCGGAAACATAGAGTTTGTGAAAGTCATTCCAAATCCCCTAAGGTGGTTATAGCTGGCATGGAACGTCGATTTTGCCAGCAATGCAGCAGGTTCCACGATCTTTCTGAGTTTGATGAGAAAAAGAGAAGCTGCAGGCGACGTCTTACAGATCACAATGCAAGGCGCCGTAAACCTCATCCTGTAGCTGTTCGATTAAATCAACCAGCTTTGTCTCCTTCACTCTATGATGGGAGGCAACATATGAGTCCATTCAGTTATTCGCGGACTGGTACAAATTTAGCCTGGCAAGACACACACAGCAGCAAGCTCCCCCAGGCGAAAGATTTTCTCTTGAATCCTGCAAAAGCCAATAATGAGATGCCGAGTATTGGCACTATGGTTTCGTATGATTTCAACTCCCCTTTTATTTCCAAGGGCATTGCAACAAGGAGTGTTAATCCAGTCATAGAAGACTCGATTACCTCATCGGATCCTAATGTCACACAAGATTTTCACCATGCTCTCTCTCTTCTGTCAACTAATTCCTGGGGTTCACATGAGCCGAAGTCCATTTCTGTTGAACATCCCAACAAAGCAACCGCAACAGCACATGCTATGAGTCAGCGCTTACCCCTTGCTTCACCAGAGTATTGGCACATTGGTCAACAACCAGTGAATTCCGGCACGTGGATCTCCTACTCTAATTGTGATGATAGCAATCGCTTTCAAGAATTTCAACTGTTCAGAGAACCTTACGAGTCTGTTTTTCCTTACAACCAGTTGGATTAA	1329	0.4417	MDWNAKSPSQWDWEQSLFLNAKATEISKSQPNWNGETNQEINVGLMDTYGGSGCSGSELIHTSSSRSSISASNNSSSNRDSKTSMYTLESSLDDSSGKKELSKVEISHALESSSVSGEPLLSLKLGKRLYFEDVYPGSNSKSPSFSRAPMSSLGAGKKGKSSGQNVQLTRCQVEGCGLDLSSAKDYHRKHRVCESHSKSPKVVIAGMERRFCQQCSRFHDLSEFDEKKRSCRRRLTDHNARRRKPHPVAVRLNQPALSPSLYDGRQHMSPFSYSRTGTNLAWQDTHSSKLPQAKDFLLNPAKANNEMPSIGTMVSYDFNSPFISKGIATRSVNPVIEDSITSSDPNVTQDFHHALSLLSTNSWGSHEPKSISVEHPNKATATAHAMSQRLPLASPEYWHIGQQPVNSGTWISYSNCDDSNRFQEFQLFREPYESVFPYNQLD*	443

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Lan18g0295	442	PANTHER	SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 2	23	441	-	-
Lan18g0295	442	MobiDBLite	consensus disorder prediction	56	99	-	-
Lan18g0295	442	Pfam	SBP domain	171	244	IPR004333	GO:0003677
Lan18g0295	442	Gene3D	-	161	232	IPR036893	GO:0003677\|GO:0005634
Lan18g0295	442	MobiDBLite	consensus disorder prediction	138	164	-	-
Lan18g0295	442	PANTHER	SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4	23	441	IPR044817	GO:0003677
Lan18g0295	442	MobiDBLite	consensus disorder prediction	56	92	-	-
Lan18g0295	442	ProSiteProfiles	Zinc finger SBP-type profile.	168	245	IPR004333	GO:0003677
Lan18g0295	442	SUPERFAMILY	SBT domain	169	247	IPR036893	GO:0003677\|GO:0005634

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan18g0295	Lan-Chr18	5020665	5025977	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan18g0295	1	362	SBP-box Gene Family	AT1G27370	42.175	1.70e-66	216

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	SBP	Lan18g0295		SBP	6.9e-32	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan18g0295	-		-	gmx:100781289	512.686

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