Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0295 ATGGATTGGAATGCAAAATCTCCCTCACAGTGGGATTGGGAGCAATCACTTTTCCTCAATGCAAAAGCAACTGAAATTTCCAAATCGCAGCCAAACTGGAATGGTGAAACAAACCAAGAAATCAATGTCGGGTTGATGGATACATATGGCGGCAGTGGTTGTTCTGGGTCTGAGCTAATACACACTTCTTCATCAAGAAGCTCAATATCGGCTTCCAACAATTCATCATCAAATAGGGATAGCAAAACGTCTATGTACACTCTTGAAAGTTCCCTTGATGATTCCAGTGGTAAAAAAGAATTGTCTAAAGTTGAAATTTCTCATGCACTAGAGTCCTCTTCTGTCTCGGGTGAACCACTGCTCTCTCTGAAACTTGGTAAGCGGCTGTACTTTGAGGATGTTTACCCTGGAAGTAATTCAAAGAGCCCATCTTTTTCCCGGGCTCCTATGTCATCTTTGGGTGCTGGAAAAAAGGGCAAGTCCAGTGGTCAGAATGTACAACTTACACGCTGCCAGGTTGAAGGCTGTGGCCTTGATCTCTCATCGGCTAAAGATTACCATCGGAAACATAGAGTTTGTGAAAGTCATTCCAAATCCCCTAAGGTGGTTATAGCTGGCATGGAACGTCGATTTTGCCAGCAATGCAGCAGGTTCCACGATCTTTCTGAGTTTGATGAGAAAAAGAGAAGCTGCAGGCGACGTCTTACAGATCACAATGCAAGGCGCCGTAAACCTCATCCTGTAGCTGTTCGATTAAATCAACCAGCTTTGTCTCCTTCACTCTATGATGGGAGGCAACATATGAGTCCATTCAGTTATTCGCGGACTGGTACAAATTTAGCCTGGCAAGACACACACAGCAGCAAGCTCCCCCAGGCGAAAGATTTTCTCTTGAATCCTGCAAAAGCCAATAATGAGATGCCGAGTATTGGCACTATGGTTTCGTATGATTTCAACTCCCCTTTTATTTCCAAGGGCATTGCAACAAGGAGTGTTAATCCAGTCATAGAAGACTCGATTACCTCATCGGATCCTAATGTCACACAAGATTTTCACCATGCTCTCTCTCTTCTGTCAACTAATTCCTGGGGTTCACATGAGCCGAAGTCCATTTCTGTTGAACATCCCAACAAAGCAACCGCAACAGCACATGCTATGAGTCAGCGCTTACCCCTTGCTTCACCAGAGTATTGGCACATTGGTCAACAACCAGTGAATTCCGGCACGTGGATCTCCTACTCTAATTGTGATGATAGCAATCGCTTTCAAGAATTTCAACTGTTCAGAGAACCTTACGAGTCTGTTTTTCCTTACAACCAGTTGGATTAA 1329 0.4417 MDWNAKSPSQWDWEQSLFLNAKATEISKSQPNWNGETNQEINVGLMDTYGGSGCSGSELIHTSSSRSSISASNNSSSNRDSKTSMYTLESSLDDSSGKKELSKVEISHALESSSVSGEPLLSLKLGKRLYFEDVYPGSNSKSPSFSRAPMSSLGAGKKGKSSGQNVQLTRCQVEGCGLDLSSAKDYHRKHRVCESHSKSPKVVIAGMERRFCQQCSRFHDLSEFDEKKRSCRRRLTDHNARRRKPHPVAVRLNQPALSPSLYDGRQHMSPFSYSRTGTNLAWQDTHSSKLPQAKDFLLNPAKANNEMPSIGTMVSYDFNSPFISKGIATRSVNPVIEDSITSSDPNVTQDFHHALSLLSTNSWGSHEPKSISVEHPNKATATAHAMSQRLPLASPEYWHIGQQPVNSGTWISYSNCDDSNRFQEFQLFREPYESVFPYNQLD* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0295 442 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 2 23 441 - -
Lan18g0295 442 MobiDBLite consensus disorder prediction 56 99 - -
Lan18g0295 442 Pfam SBP domain 171 244 IPR004333 GO:0003677
Lan18g0295 442 Gene3D - 161 232 IPR036893 GO:0003677|GO:0005634
Lan18g0295 442 MobiDBLite consensus disorder prediction 138 164 - -
Lan18g0295 442 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 23 441 IPR044817 GO:0003677
Lan18g0295 442 MobiDBLite consensus disorder prediction 56 92 - -
Lan18g0295 442 ProSiteProfiles Zinc finger SBP-type profile. 168 245 IPR004333 GO:0003677
Lan18g0295 442 SUPERFAMILY SBT domain 169 247 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0295 Lan-Chr18 5020665 5025977 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0295 1 362 SBP-box Gene Family AT1G27370 42.175 1.70e-66 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lan18g0295 SBP 6.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0295 - - gmx:100781289 512.686