Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0289 ATGGGAGAAGGTGAGGGTATTGATTATCCTCCAAAGAATGTATCATCATCTGATGCTGCACCTGCACTTGATATTCCCGCCAAGAAGCTGGCGAGGCAGCTCAATTTCACCGGCTCTGGTGGGGCGGTGCTGCTTCCAGAACAAGAAAAATCACAGCCGCAACAGCTTCTGTTACAGGTTGATATGGCACAGAGTCAGTTGAGCCTTCAGTCACGGCCACCTCAGCCTCAGACACTGGCGCAATCAGTGATTTCTTCGCTGCCGCTACAGCAGCTTCCACTGCAGGCACCTCATCCTTCATTGAGGGTTGGGAAATCAGAATCTCCAAAAGCAAGATCAAGACCCAACTTTGAAAGTAAAGATGGTACTCCAAAGAAGCAAAAGCAGTGCAATTGCAAACACTCAAAATGCTTAAAGCTATATTGTGAATGTTTTGCATCGGGAGTATATTGTGATGGCTGCAACTGTGTAAATTGTTATAACAATGTTGAAAATGAAGCTGCCAGACGAGAAGCTGTTGAAGCTACTTTAGAACGCAATCCAAATGCATTTAGACCAAAAATTGGGAGCAGCCCTCATGGGGCATGTGATAGAAGGGAGGAGGTTGGGGAAGTTTTAATATTGGGGAAGCATAACAAGGGGTGCCATTGTAAAAAATCTGGATGCCTCAAGAAGTACTGTGAGTGCTTCCAAGCCAACATTCTTTGCTCTGAAAATTGTAAATGCATGGACTGCAAGAATTTTGAGGGAAGTGAAGAAAGACAAGCTTTGTTCCATGGAGATCAAAATAACAACATGGTGTATATTCAGCAGGCAGCAAATGCTGCCATAACTGGAGCTGTTGGTTCCTCTGGTTTTTCATCACCGCCTATTTCAAAGAAAAGAAAAGGTCAGGAACTCTACTTTGGGGCTACAACAAAGGATTCATCTGTTGGCAGGCTGGGACAACAGGCAAACCACGTTAGGAGTCCTGCACCCTCCTTATCCTTGTCTCCTATCCCATGTGCTCATGTTGGACCTTCAACAGTAGGTCCTTCAAAAGTTATGTACAGGTCTCTTTTAGCAGACATCATACAACCACAGCACCTTAAGGAGCTTTGCTTAGTTCTGGTTCTTGTATCTGGACAAGCTGCAAAGACACTGACAGACCAGAAAAATTTAATGGACAAGCATACAGAAGATCGGCGGGCAACATCCCATGTTTTTTCAACTCAAGAGCAATTACCAAGCCAAAAGGAATCCGATGATTGTTCGAAAGCAAACCAAACAGATAAAATCAGCCCAGATAATTCCAGTTCAGATGGTGCTGATGCCCCAAAAGGAAGGTCAATGTCTCCTGGAACTTTAGCATTAATGTGTGATGAGCAAGATACAATGTTCATGACTACTGCCTCCTCAATTGGGTCAATAGCCCATGCTTGCAACACATCTTCACAATTGCCTTACAGACAAGGAATGACGGATGCCTATGCAGAGCAAGAAAGGATTGTGTTGACGAAGTTTAGAGATTTTCTTAACAGGGTTATAACTATAGGAGAAATAAATGAAACAAAGTGTTCTTCATTAGCCAGAAGTGAATTACACAGTCCAAAGGACCCAATCATCAATGGCACTGGAAATGCCAGAGCGGAGACAACACAACAGCAGGGAGCCGCCAGTAATGGTGTTGCCAAAGCTCATGTTCCACCCATGGCAACAAGTATGAGCACGATATCCACATCTTTGGTTGCTAATAATGTTCCTGAAAATGGGGAAATTAAGCTGAAGGTGGAAAAAGATATATGA 1785 0.4381 MGEGEGIDYPPKNVSSSDAAPALDIPAKKLARQLNFTGSGGAVLLPEQEKSQPQQLLLQVDMAQSQLSLQSRPPQPQTLAQSVISSLPLQQLPLQAPHPSLRVGKSESPKARSRPNFESKDGTPKKQKQCNCKHSKCLKLYCECFASGVYCDGCNCVNCYNNVENEAARREAVEATLERNPNAFRPKIGSSPHGACDRREEVGEVLILGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDQNNNMVYIQQAANAAITGAVGSSGFSSPPISKKRKGQELYFGATTKDSSVGRLGQQANHVRSPAPSLSLSPIPCAHVGPSTVGPSKVMYRSLLADIIQPQHLKELCLVLVLVSGQAAKTLTDQKNLMDKHTEDRRATSHVFSTQEQLPSQKESDDCSKANQTDKISPDNSSSDGADAPKGRSMSPGTLALMCDEQDTMFMTTASSIGSIAHACNTSSQLPYRQGMTDAYAEQERIVLTKFRDFLNRVITIGEINETKCSSLARSELHSPKDPIINGTGNARAETTQQQGAASNGVAKAHVPPMATSMSTISTSLVANNVPENGEIKLKVEKDI* 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0289 594 Coils Coil 160 180 - -
Lan18g0289 594 MobiDBLite consensus disorder prediction 1 20 - -
Lan18g0289 594 MobiDBLite consensus disorder prediction 105 128 - -
Lan18g0289 594 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 24 575 - -
Lan18g0289 594 SMART CXC_2 210 251 IPR033467 -
Lan18g0289 594 SMART CXC_2 125 165 IPR033467 -
Lan18g0289 594 MobiDBLite consensus disorder prediction 388 448 - -
Lan18g0289 594 MobiDBLite consensus disorder prediction 401 416 - -
Lan18g0289 594 MobiDBLite consensus disorder prediction 423 438 - -
Lan18g0289 594 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 127 162 IPR005172 -
Lan18g0289 594 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 213 247 IPR005172 -
Lan18g0289 594 ProSiteProfiles CRC domain profile. 126 250 IPR005172 -
Lan18g0289 594 PANTHER TESMIN/TSO1-RELATED 24 575 IPR028307 -
Lan18g0289 594 MobiDBLite consensus disorder prediction 97 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0289 Lan-Chr18 4515599 4523623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0289 1 563 CPP Transcription Factor Family AT4G29000 53.072 0.0 556
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Lan18g0289 TCR 3.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0289 - - gmx:100777698 788.489