Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0264 ATGTCTTCTGACGGCAGCGGCGGAAGCGGCGGAAGCGGCGGAAGCGGCGGCGCCACTAACGCCAACGCTTCTCGTCACCAATATTTCTGCTACCAGTGCAACCACACAGTCTCCATCACTCCCTCCTCCGATCTCGCCTGCCCCGATTGCAACAGCGGCTTCGTCGAAGAAGTCGAAAACCCGATCCCTCAACCACAGCCCTTCTCCTTCACCTATGAATTCGGCGGCGGCGGCGACGATCTCCCTTCCCTCTTCGGCGGCCGATCTCCTTTCGGCGACGCCGACGCTTTTAACCCTCTCGTCTTTCTCCAGAACTACATCCAAACCCTCAGAGCCGGCGGCGCCAACGTTCAATTCGTCATCGATAACTCCGCGTCGGGTCTTCCGGCGAATCTCAATCTCGGCGATTATTTCTTCGGCCCCGGCCTCGAGCAATTGATTCAGCATCTCGCCGAGAACGATCCCAACCGCCACGGTACACCTCCGGCTTCAAAGAAAGCCGTCGAAGGGCTCCCGGAAATCGCAATCACAGAGGAATTGCTGGATTCCGATTCGTCGCAGTGTGCTGTGTGTAAAGACACGTTCGAGCTAAATGAAATCGCTAAGCAATTGCCTTGTAAACATATTTATCATTCTGATTGCATACTTCCATGGTTGGAATTGCACAATTCTTGCCCTGTGTGTCGTTACGAGTTACCGACGGATGATCCTGACTATGAGCAGAGGGCTCAGGGTGGTGCAGGCGCGGTCGAGGGTGCGGTCCAGATAAATCAGAATCAGGATCAGTCTGCTGCTGGAGATAGCTCACAATCGCAGTTGCAGTCGCCAAGGGAGCACAGGTTTAATGTGGCTTTGCCTTGGCCGTTTAGACAATTTTATGGAGATACAAGCAATGTTGGGACAGGGAATGATAATAACACTGGTGGGGAATCAAATCCTGGAAGTAGGGGAAATCAGAATTTTGAGTCAGGAACAGGACAAGAAGATCTGGATTGA 996 0.5321 MSSDGSGGSGGSGGSGGATNANASRHQYFCYQCNHTVSITPSSDLACPDCNSGFVEEVENPIPQPQPFSFTYEFGGGGDDLPSLFGGRSPFGDADAFNPLVFLQNYIQTLRAGGANVQFVIDNSASGLPANLNLGDYFFGPGLEQLIQHLAENDPNRHGTPPASKKAVEGLPEIAITEELLDSDSSQCAVCKDTFELNEIAKQLPCKHIYHSDCILPWLELHNSCPVCRYELPTDDPDYEQRAQGGAGAVEGAVQINQNQDQSAAGDSSQSQLQSPREHRFNVALPWPFRQFYGDTSNVGTGNDNNTGGESNPGSRGNQNFESGTGQEDLD* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0264 331 CDD RING-H2_RNF126_like 187 229 - -
Lan18g0264 331 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 92 298 - -
Lan18g0264 331 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 18 67 - -
Lan18g0264 331 ProSiteProfiles Zinc finger RING-type profile. 188 229 IPR001841 -
Lan18g0264 331 SUPERFAMILY RING/U-box 168 235 - -
Lan18g0264 331 Pfam Ring finger domain 187 229 IPR001841 -
Lan18g0264 331 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1 92 298 - -
Lan18g0264 331 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1 18 67 - -
Lan18g0264 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 235 IPR013083 -
Lan18g0264 331 Pfam zinc-ribbon 27 57 IPR039525 GO:0061630
Lan18g0264 331 MobiDBLite consensus disorder prediction 294 331 - -
Lan18g0264 331 SMART ring_2 188 228 IPR001841 -
Lan18g0264 331 MobiDBLite consensus disorder prediction 259 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0264 Lan-Chr18 3710493 3718066 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0264 129 241 C3H Transcription Factor Family AT5G01980 50.442 3.87e-34 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0264 - K11982 lang:109333167 630.557