Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0259 ATGGATCAGAAATGCAATGTATCTCTCTTTGATACTAAGAAAAATATTCCAGCACCACCGCCTTTGCCGCGTTCAATGGCCACAGCTTTTCCTTGCAAGGTGGAGAATAATAATCCACCTGCAAGAATGCACAGCAATGTGTCTTCAGCAACAAGAGATTTGTGGCAGAGAGTTTACAATGAAGGCTATAAAGCAGATGTTTACATTAGTACTGATAATGGTGGCATTATTTATGCTCATTCTATCATTCTTGCCACAGCTTCTCCTGTATTGAAAGGCATGTTGAAGCAAGCAAATCGTCATCACCATTGGCGACCAATCTCAATATTTGGGGTTCCTCATGATGCAGTACGAGTTTTCGTTCGCTACTTGTACTCCTCTTGTTATGAGAAAGAAGAAATGAAGCAATTCACCTTGCATTTGTTGGTGCTGTCACATGTATTTGTGGTTCCTCAGTTGAAGCATGAATGTCAACAAAAGCTAGAGTTGGATTTCCTAACCATAGATAATGTAGTTGATTTTTTCCAACTCTCTTTACTATGTCATTCTCCCCGGCTTGTCCTCATTTGTCACCGTAAAATACTACAAAATTTTAAAGCAGTTTCAGAGTCAGAAGGGTGGAAAGTAATGAAGCAGAGTCACCCAGTTCTAGAGAAGGAACTTTTAGAGTCTTTGGTTGAAGAAGAAAATAGAAAAACGAAGAACATGCGAAGGAAGAATGAGAGGGTGATCTATGGGCAATTATATGAGGCAATGGATGCTCTTGTTCACATATTTAGCGATGGTTGTCGAACAATTGGCCCGCATGATAAGGACTTCAAAGCAAACCAGGCACCGTGTAGTTATGCAGCTTGCAAAGGGCTAGAATTGCTCGTCCGCCATTTTGCTGGCTGCAAGTTGAGATTGCCAGGAGGTTGTGTTCATTGCAAGAGAATGTGGCAAGTATTAGAGCTTCACTCTCGACTATGTGTTGATCCAGATCAATGTAGAGTTCCTCTTTGCAGGAAGTTTAAGCAGCGAATATCAAGACAAGGAAAGAAAGACAATGTTAAGTGGAAAATATTGGTTGAGAAGATCTTCAGAACACGGGGCATTGTGTTAGCACCATGCTTTCAGAGGCAATAA 1125 0.4098 MDQKCNVSLFDTKKNIPAPPPLPRSMATAFPCKVENNNPPARMHSNVSSATRDLWQRVYNEGYKADVYISTDNGGIIYAHSIILATASPVLKGMLKQANRHHHWRPISIFGVPHDAVRVFVRYLYSSCYEKEEMKQFTLHLLVLSHVFVVPQLKHECQQKLELDFLTIDNVVDFFQLSLLCHSPRLVLICHRKILQNFKAVSESEGWKVMKQSHPVLEKELLESLVEEENRKTKNMRRKNERVIYGQLYEAMDALVHIFSDGCRTIGPHDKDFKANQAPCSYAACKGLELLVRHFAGCKLRLPGGCVHCKRMWQVLELHSRLCVDPDQCRVPLCRKFKQRISRQGKKDNVKWKILVEKIFRTRGIVLAPCFQRQ* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0259 374 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED 2 372 IPR044513 -
Lan18g0259 374 SUPERFAMILY POZ domain 45 191 IPR011333 -
Lan18g0259 374 Coils Coil 219 242 - -
Lan18g0259 374 ProSiteProfiles BTB domain profile. 65 133 IPR000210 GO:0005515
Lan18g0259 374 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 4 2 372 - -
Lan18g0259 374 Gene3D Potassium Channel Kv1.1; Chain A 34 165 IPR011333 -
Lan18g0259 374 SMART BTB_4 65 165 IPR000210 GO:0005515
Lan18g0259 374 SMART TAZ_2 242 335 IPR000197 -
Lan18g0259 374 SUPERFAMILY TAZ domain 244 343 IPR035898 -
Lan18g0259 374 Pfam BTB/POZ domain 61 161 IPR000210 GO:0005515
Lan18g0259 374 Gene3D - 166 238 - -
Lan18g0259 374 Pfam TAZ zinc finger 249 334 IPR000197 -
Lan18g0259 374 CDD BACK 167 208 - -
Lan18g0259 374 Gene3D TAZ domain 239 365 IPR035898 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0259 Lan-Chr18 3548832 3551841 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Lan18g0259 BTB 2.6e-10 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0259 - - lja:Lj2g3v1968190.1 528.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0345 17 2507756 2512891 Lan18g0259 18 3548832 3551841 LSH
Lan6g0919 6 8581038 8583337 Lan18g0259 18 3548832 3551841 LSH