Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0257 ATGGCCATAAGGCCCTTTCAATTCACCTTCTCTCGCAATAATCCATTCCTCTTTCTCTTCCGCACTTCTCAATCTTTCTCATTCCCCTCTTCTCATTTTCCCAACACTTTCTTTCTCCGCCACCGCGCTTCTTCCGCCGCCCCGCCTTATCCGCCGCTCCCCCACGACCTCCGCCGACGCTTTCGCCCCCCGCCACCGCCACACGACACCCTGGCGCAGAAGATTGGGAAAGCCACTCGCCGCCCTGGCGCTCCTTCCAAAGCTAGGGTTTATTCCGATGTCAACGTTGTTCGCCCTAAGGAATATTGGGACTATGAAAACCTCACCGTTCAATGGGGGGAGCAAGATGATTATGAGGTGGTGAAGAAGGTCGGAAGGGGAAAATACAGTGAGGTGTTTGAGGGTGTTCACTGTACCAATAATGAAAAGTGTGTCATTAAGATCCTGAAACCTGTCAAGAAGAAGAAGATCAAGAGGGAAATCAAAATATTGCAGAATCTTTGTGGAGGGCCCAATATTGTGAAGTTGCATGACATCGTTAGAGACCAGCAGTCGAAGACCCCAAGCTTTATATTCGAACATGTTAATAATACTGATTTTAAAGTGCTATATCCTACATTATCAGACTATGATATCCGATATTATATTCTTGAACTTCTAAAGGCACTGGATTATTGCCACTCACAAGGAATCATGCATCGGGATGTAAAGCCACATAATGTGATGATTGATCATGAACAGCGTAAGCTTCGCCTTATAGATTGGGGTCTTGCTGAGTTCTATCATCCTGGGAAAGAATATAATGTTCGGGTTGCCTCAAGATATTTCAAAGGTCCTGAACTTCTTGTTGATCTTCAAGACTATGATTACTCTTTAGACTTATGGAGTCTTGGTTGTATGTTTGCTGGGATGATATTCCGTAAGGAGCCATTCTTCTATGGGCATGATAACTATGATCAACTGGTCAAAATAGCTAAGGTTCTTGGGACAGATGAGTTAAGTGCATATTTGAATAAATACCGCATAGAGTTGGACCCACACCTTGCAGCACTTATTGGAAGGCATAGCCGGAAGCCATGGGCGAAGTTCATTAATGTAGAAAATCAACACCTGGCTGTTCCCGAGGCTGTTGACTTTGTTGACAAGTTACTACGGTATGATCACCAAGAGCGACCGACTGCAAAAGAAGCAATGGCCCATCCTTATTTCAATCCAGTCAGAAATGCAGAAAGTAGCAGAACTCGTGCACATTGA 1254 0.449 MAIRPFQFTFSRNNPFLFLFRTSQSFSFPSSHFPNTFFLRHRASSAAPPYPPLPHDLRRRFRPPPPPHDTLAQKIGKATRRPGAPSKARVYSDVNVVRPKEYWDYENLTVQWGEQDDYEVVKKVGRGKYSEVFEGVHCTNNEKCVIKILKPVKKKKIKREIKILQNLCGGPNIVKLHDIVRDQQSKTPSFIFEHVNNTDFKVLYPTLSDYDIRYYILELLKALDYCHSQGIMHRDVKPHNVMIDHEQRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDLWSLGCMFAGMIFRKEPFFYGHDNYDQLVKIAKVLGTDELSAYLNKYRIELDPHLAALIGRHSRKPWAKFINVENQHLAVPEAVDFVDKLLRYDHQERPTAKEAMAHPYFNPVRNAESSRTRAH* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0257 417 SMART serkin_6 118 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan18g0257 417 PANTHER CASEIN KINASE II SUBUNIT ALPHA 68 409 IPR045216 GO:0004674|GO:0006468
Lan18g0257 417 MobiDBLite consensus disorder prediction 397 417 - -
Lan18g0257 417 ProSitePatterns Protein kinases ATP-binding region signature. 124 147 IPR017441 GO:0005524
Lan18g0257 417 Gene3D Transferase(Phosphotransferase) domain 1 195 404 - -
Lan18g0257 417 ProSitePatterns Serine/Threonine protein kinases active-site signature. 231 243 IPR008271 GO:0004672|GO:0006468
Lan18g0257 417 Gene3D Phosphorylase Kinase; domain 1 171 194 - -
Lan18g0257 417 Gene3D Phosphorylase Kinase; domain 1 109 167 - -
Lan18g0257 417 CDD STKc_CK2_alpha 99 403 IPR045216 GO:0004674|GO:0006468
Lan18g0257 417 Pfam Protein kinase domain 118 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan18g0257 417 PANTHER BNAA04G13490D PROTEIN 68 409 - -
Lan18g0257 417 ProSiteProfiles Protein kinase domain profile. 118 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan18g0257 417 SUPERFAMILY Protein kinase-like (PK-like) 89 407 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0257 Lan-Chr18 3412870 3418541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0257 115 403 Core Cell Cycle Gene Families AT3G48750 31.894 4.17e-39 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Lan18g0257 Pkinase 3.4e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0257 K03097 - gmx:100776388 684.871
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g0257 18 3412870 3418541 Lan17g1301 17 21263775 21268917 LSH