Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0231 ATGGCGGCGACAGTTTCATCGAACCGCTACTCCGATGACGGCGCCACTAATCGGACACCGATTCTCGGAAACTCCGGCAGCTCCTCCGACGAATCTAACCGATTCTCGCGGCGAGGTATACGTCAAGCGGCACGGTTCCTCCGCCAAGCGAGTGGCCAGAGGATGATGCGGGAGCCGTCGATGATGGTGAGAGAGACGGCGGCGGAGCAATTGGAGGAGCGGCAGAGCGATTGGGCTTATTCGAAGCCCGTGGTGGTGCTGGATATTCTCTGGAACTTTGCGTTTGTTGTTACCGGCGCTACGGTGTTGATTCTGAGTGTGAATGAAACTCCGAGCATGCCTTTGACGGTGTGGGTTATTGGTTATGCTCTGCAGTGTATTCTTCATGTGGTTTGTGTTTGTATTGAGTTTAAGAAGCGGAGAAGGACTCGGAGGGAAGAGTCGAACGCCGTGGCGGTGCAAGATGGTGTTGATGGAAGTGTGGATTTGAGCTCTGGTTCTGGACAATATCAGTTAATGTCTCAATTGGATGAAGAGGGTACAAGTATGGCGAAGCGTTTGGAATCAGCCAACACAATGTTTTCATTTATTTGGTGGGTCGTTGGATTCTATTGGGTTTCAGCTGGTGGTCAAGATTTGGCCCAAGATTCTCCTCTGCTATACTGGCTATGCATAGTTTTCCTGGGGTTTGATGTTTTCTTTGTCGTTTTCTGTGTTGCACTGGCCTGCTTCATTAGCATTGCCGTTTGCTGTTGCCTTCCATGCATCATTGCACTTCTGTATGCAGTTGCAGACCAGGATGGGGCAACGAAAAAAGACATAGAGCACTTGTCGAAATACACATTCCGAAGAATTTCCAATGATGCGAAACTTGCTGGTAATCCCGAAGGACCTGCTGGTGGAATAATGACCGAATGTGTGGCTAATTCACCTACTGAACATGATATTTGTGATGGAGATGCGGAATGTTGCATCTGTCTTTCAGAATATGAAGATGGAGCTGAACTAAGAAAACTTCCTTGTGGTCACCACTTTCACTGTACCTGTGTGGACAAATGGCTGCATATTAATGCTACTTGCCCTCTCTGCAAGTATAACATCTTAAAATGTACAGAGGAAGTGTAG 1125 0.4809 MAATVSSNRYSDDGATNRTPILGNSGSSSDESNRFSRRGIRQAARFLRQASGQRMMREPSMMVRETAAEQLEERQSDWAYSKPVVVLDILWNFAFVVTGATVLILSVNETPSMPLTVWVIGYALQCILHVVCVCIEFKKRRRTRREESNAVAVQDGVDGSVDLSSGSGQYQLMSQLDEEGTSMAKRLESANTMFSFIWWVVGFYWVSAGGQDLAQDSPLLYWLCIVFLGFDVFFVVFCVALACFISIAVCCCLPCIIALLYAVADQDGATKKDIEHLSKYTFRRISNDAKLAGNPEGPAGGIMTECVANSPTEHDICDGDAECCICLSEYEDGAELRKLPCGHHFHCTCVDKWLHINATCPLCKYNILKCTEEV* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0231 374 MobiDBLite consensus disorder prediction 1 35 - -
Lan18g0231 374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 303 369 IPR013083 -
Lan18g0231 374 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 3 372 - -
Lan18g0231 374 SUPERFAMILY RING/U-box 315 369 - -
Lan18g0231 374 SMART ring_2 323 363 IPR001841 -
Lan18g0231 374 ProSiteProfiles Zinc finger RING-type profile. 323 364 IPR001841 -
Lan18g0231 374 CDD RING-H2_RNF111_like 322 366 - -
Lan18g0231 374 MobiDBLite consensus disorder prediction 1 33 - -
Lan18g0231 374 Pfam Ring finger domain 322 364 IPR001841 -
Lan18g0231 374 PANTHER TARGET OF ERK KINASE MPK-1 3 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0231 Lan-Chr18 2467676 2474134 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0231 7 373 C3H Transcription Factor Family AT1G68070 48.108 2.92e-115 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0231 - - gmx:100790497 521.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0907 17 11895167 11899263 Lan18g0231 18 2467676 2474134 LSH