Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0218 ATGGATGAAAGAGAAGCTATGGCATTCTCTGGTGGGAAGGGTTCATATTACTTGCATAGAGAAGGGGTTGCAGGGTCTGGTGGGGGGTTCCATGCACCCCCTCCTGGTTTTAGAGCTTTGTCAAACACCGGCATTCAAGCTCAGTCAAATGTTGCTAGGGGTGATGGTGGTTCTTCGGGTTCTACGTTTTTGGCTGTAGAACCTCAATTTCGCCCGAGTTTTAGTCATGGTGGAATTAACGTTGGTGGTGTTTCGTCTGGTGGGGTACTTCCTCTTACTTCTTCAGCTGAGAATGTGAAGAAGAAAAGAGGGAGACCCCGGAAATATGATTCTACTGATGGAGCTGTTTCTTTGAAACTGTCTCCGTTCGCTGGCACTGCTAATTCTTCAACACCGAGTTCCACCACACCTTCGGAGAAAAGGGCTAGAGGGCGTCCTCCTGGATCTGGAAGGAAGCAGCAACTAGCATCTCTAGGTGAATGGATGAACCGTTCGGCAGGGCAGGCTTTTTCACCGCATGTTATCTCCATTGGAGTTGGGGAGGACATTGTAGCAAAATTATTGTCATTGTCACAGCAGAGACCAAGGGCTATGTGCATCTTATCGGGCACTGGGACAGTTTCTTCAGTTACTCTGCAACGTCCTGCTTCTACCGATGCCAGTAACACTTTTGAGGGCCGATTCCAATTATTATGCCTGTCTGGTTCGTACTTGGTTACTGAAGATGGTGGACCATCCGATAGAAAAGGCGGCATAAGTGCTTCCCTTTCGAGCCCCGATGGTCATGTTATTGGTGGCAGTGTTGCTGCGCTTATCGCTGGCAGCCCAGTGCAGGTGGTAGTGTGCAGTTTCTTACATGGTAGTAAAACAAAGACTAAGCAAGAGACTGTTACCAAAGATGACGACAGTTCCGAGCCTCAACATAGCGACAAGTTACCTTCTCCAGCCACTGCTCCTCCGACTCAAAACTACATCCCTTCAGCAACAGGCATGTGGCCTGGACCGCGATCAGAAGATGTGAAAAGCGAACAAATGCAAACGGGCATCGACTTGACGCGCGGATGA 1065 0.492 MDEREAMAFSGGKGSYYLHREGVAGSGGGFHAPPPGFRALSNTGIQAQSNVARGDGGSSGSTFLAVEPQFRPSFSHGGINVGGVSSGGVLPLTSSAENVKKKRGRPRKYDSTDGAVSLKLSPFAGTANSSTPSSTTPSEKRARGRPPGSGRKQQLASLGEWMNRSAGQAFSPHVISIGVGEDIVAKLLSLSQQRPRAMCILSGTGTVSSVTLQRPASTDASNTFEGRFQLLCLSGSYLVTEDGGPSDRKGGISASLSSPDGHVIGGSVAALIAGSPVQVVVCSFLHGSKTKTKQETVTKDDDSSEPQHSDKLPSPATAPPTQNYIPSATGMWPGPRSEDVKSEQMQTGIDLTRG* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0218 354 Gene3D - 172 302 - -
Lan18g0218 354 Pfam Plants and Prokaryotes Conserved (PCC) domain 172 284 IPR005175 -
Lan18g0218 354 MobiDBLite consensus disorder prediction 122 140 - -
Lan18g0218 354 SMART AT_hook_2 100 112 IPR017956 GO:0003677
Lan18g0218 354 SMART AT_hook_2 140 152 IPR017956 GO:0003677
Lan18g0218 354 MobiDBLite consensus disorder prediction 41 64 - -
Lan18g0218 354 SUPERFAMILY AF0104/ALDC/Ptd012-like 168 292 - -
Lan18g0218 354 MobiDBLite consensus disorder prediction 340 354 - -
Lan18g0218 354 CDD DUF296 172 284 IPR005175 -
Lan18g0218 354 ProSiteProfiles PPC domain profile profile. 167 307 IPR005175 -
Lan18g0218 354 MobiDBLite consensus disorder prediction 291 354 - -
Lan18g0218 354 MobiDBLite consensus disorder prediction 23 64 - -
Lan18g0218 354 MobiDBLite consensus disorder prediction 98 112 - -
Lan18g0218 354 MobiDBLite consensus disorder prediction 309 328 - -
Lan18g0218 354 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 354 - -
Lan18g0218 354 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 354 IPR039605 GO:0003680
Lan18g0218 354 MobiDBLite consensus disorder prediction 85 155 - -
Lan18g0218 354 MobiDBLite consensus disorder prediction 292 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0218 Lan-Chr18 2180969 2185880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0218 1 354 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 48.346 3.62e-86 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0218 - - gmx:100798706 436.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g1109 18 16116217 16118990 Lan18g0218 18 2180969 2185880 PCT
Lan6g0102 6 679154 684185 Lan18g0218 18 2180969 2185880 PCT